Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0428 ATGGAAATGGCTTTGAGTCCGCGAACCGTAGAGGAGATCTTCAAGGATTACAGTGGTAGAAGAGTTGGTGTTGTTCGTGCTTTAACTTATGATGTGAATGAATTCTACGGTCTCTGTGATCCAGTGAAAGAAAATTTGTGTCTGTATGGACACCCGAATGAAAGCTGGGAAGTTACCTTACCTGCTGAGGAAGTTCCACCAGAGCTGCCTGAGCCAGCACTCGGTATCAATTTCGCTAGAGATGGCATGAACCGCCAAGACTGGCTTTCACTGGTTGCTGTACACAGTGATTCTTGGTTGCTTTCTGTAGCTTTCTATCTTGGAGCTCGTCTTAACCGTAATGAAAGGAAACGTCTATTTAGCTTGATCAATGATCTGCCCACTGTCTTTGAAGTTGTGACAGAAAGGAAACCTGTTAAAGACAAGCCCAGTGTGGACAGTGGAAGCAAATCTCGAGGAAGTACAAAGAGATCAAACGATGGACAAGTGAAAAGCAACCCTCGGGTTGCAGAAGAGAGTTATGAGGAGGATGAAGATGAACACAGCGAAACCCTCTGTGGGAGCTGTGGTGGAAATTACAGTGCGGACGAGTTTTGGATTGGTTGCGATATCTGTGAGAGGTGGTTCCATGGAAAGTGCGTAAAGATAACACCCGCCAAAGCTGATAGCATTAAACAATACAAGTGCCCATCTTGCAGCATGAAGAAGGGGAGGCAGTAG 720 45.83 MEMALSPRTVEEIFKDYSGRRVGVVRALTYDVNEFYGLCDPVKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRQDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPVKDKPSVDSGSKSRGSTKRSNDGQVKSNPRVAEESYEEDEDEHSETLCGSCGGNYSADEFWIGCDICERWFHGKCVKITPAKADSIKQYKCPSCSMKKGRQ 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2086673 2089334 + Conep03aG0044100.1 Cone3ag0428 433887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0428 239 Pfam Alfin 9 134 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cone3ag0428 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Cone3ag0428 239 CDD PHD_AL_plant 185 235 IPR044104 -
Cone3ag0428 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Cone3ag0428 239 PANTHER CPG BINDING PROTEIN 6 238 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone3ag0428 239 FunFam PHD finger alfin-like protein 178 234 - -
Cone3ag0428 239 Pfam PHD-finger 186 232 IPR019787 -
Cone3ag0428 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Cone3ag0428 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Cone3ag0428 239 SMART PHD_3 185 233 IPR001965 -
Cone3ag0428 239 MobiDBLite consensus disorder prediction 140 179 - -
Cone3ag0428 239 MobiDBLite consensus disorder prediction 148 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0428 Cone-Chr3:2086673 Cone7ag0758 Cone-Chr7:4685575 2.05E-111 dispersed
Cone10ag0390 Cone-Chr10:1840519 Cone3ag0428 Cone-Chr3:2086673 1.37E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45788 PF00071 Ras 1.10E-20 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0428 K26274 - cit:102609983 444.121