Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0455 ATGACAAGTTCTCTTACAAACGTTCTTTCCAATAACAGTATGGACCATGTTGGGCAAGAGACAAATGGACACAGCAGCTGGTCGGCAAATAACTATGACCACAAAACCCATGGAACTGGATTTTATGTCCAGATTCCGAAATTCAGATCACTACAACCCTCTTCTCTGCCTCTCTCTCCTCCTCCTGTCTCTCCTTCCTCCTACTTCTCTTTCCCATCTGAACTCTTAAACTCGCCTTTGTTTCTGACCTCTCCTGATATTTTCCCACCATCAACAACAAGTGGAGGTTTTGCTGGCCAGAGCTTTGACTGGAGTGTTAATTCTACTAATGGTATTAACAACCAACAAGGACGGAATGGAGAAGTATCCGAAAATTACTTTGATTTCTCATTTGAGCCACAAAAAATCTCAGGGTCCACAACAGCGGCAACACAGACGACAACATCTTCCTCTTTCTTTCAACCTTCTTCGTCCACCATGCTTTCTATACAACAAGAGGCATGGAACCAACCTGATAACAATGAAAAACAACCAGCGACTCGATCTGATTTCTCGGCCCAAGTGAAGTCGGAATTAATGGGGAGTGAACAAATGAAGATGCAGAGCAATTCTGATCAAACCCATCATTACACTGCTCAACCATCTCATTACCTAAGAGAGCAAAAAAAGTCTCAAGACGGATACAACTGGAGAAAGTACGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCTCGGAGTTATTACAAGTGCACATACCCGAATTGCCCGACAAAGAAGAAAGTTGAAACATCTTTGGAGGGACAGATTACTGAAATTGTATACAAAGGAAGTCATAATCATCCCAAGCCTCAATCTACCAAAAGATCCAATTCGAGTACTCATTCTCACTTGATCCATTTTACAGTTTCACAAGCCAATTCATCAATCTCTGATCCATCATCTCACCCACTAAGCAATACCCAGATGGAATCTGTTCCATTGCAGGAAGATTCTAACTCTGTATCGATTGGAGATGATGATTTGGAACCTGATTCTTCAATGAGTAATTCCCTAGGATATGATGAAAATGAGCAGCCCCATGCAAAAAGATGGAAGGGGGAAAATGAAAATGAAGGATATTCAGCTCCTGGAAGTCGAACTGTAAGAGAACCGAGAGTTGTTGTTCAAACGACAAGTGAAATCGATATTCTAGACGACGGCTATAGATGGAGGAAATATGGGCAGAAAGTAGTTAAGGGGAACCCAAATCCAAGGAGCTATTACAAATGTACTTCACCAGCATGTCCAGTTCGGAAACATGTGGAACGAGCAGCCACGGATACGAAGGCCGTCATTACAACATATGAAGGGAAACACAACCACGATGTTCCAGCGGCTCGTGGAAGTGGGAGCTACGCAATCAATAGGCCATCATCGACCAACAATGCACATTCTACTTTACGGCCTGTAGCTTTGCCTAGTAGTCACCAACAACCTCCCTTTACTCTAAAGAGATTGCAAAGTTCAGACAGTTTTGGAATCATGTTCGGAAAATCGAACGCTTCTAGCTACATGGACGAGACACAAAACTCGGGAGGTTTCTTCTCCGGGCCTAAGCAAGAAGTTAAGGACGACACATTCTTCGAGTCGTTTCTTTCTTAA 1641 42.9 MTSSLTNVLSNNSMDHVGQETNGHSSWSANNYDHKTHGTGFYVQIPKFRSLQPSSLPLSPPPVSPSSYFSFPSELLNSPLFLTSPDIFPPSTTSGGFAGQSFDWSVNSTNGINNQQGRNGEVSENYFDFSFEPQKISGSTTAATQTTTSSSFFQPSSSTMLSIQQEAWNQPDNNEKQPATRSDFSAQVKSELMGSEQMKMQSNSDQTHHYTAQPSHYLREQKKSQDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVETSLEGQITEIVYKGSHNHPKPQSTKRSNSSTHSHLIHFTVSQANSSISDPSSHPLSNTQMESVPLQEDSNSVSIGDDDLEPDSSMSNSLGYDENEQPHAKRWKGENENEGYSAPGSRTVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSPACPVRKHVERAATDTKAVITTYEGKHNHDVPAARGSGSYAINRPSSTNNAHSTLRPVALPSSHQQPPFTLKRLQSSDSFGIMFGKSNASSYMDETQNSGGFFSGPKQEVKDDTFFESFLS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2192890 2195220 - Conep03aG0046900.1 Cone3ag0455 433914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0455 546 SUPERFAMILY WRKY DNA-binding domain 220 283 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0455 546 FunFam WRKY transcription factor 211 284 - -
Cone3ag0455 546 Pfam WRKY DNA -binding domain 225 281 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0455 546 Pfam WRKY DNA -binding domain 398 455 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0455 546 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 150 471 IPR044810 GO:0003700(InterPro)
Cone3ag0455 546 SUPERFAMILY WRKY DNA-binding domain 389 457 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0455 546 ProSiteProfiles WRKY domain profile. 392 457 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0455 546 FunFam WRKY transcription factor 33 384 450 - -
Cone3ag0455 546 MobiDBLite consensus disorder prediction 190 214 - -
Cone3ag0455 546 ProSiteProfiles WRKY domain profile. 219 283 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0455 546 MobiDBLite consensus disorder prediction 190 229 - -
Cone3ag0455 546 SMART WRKY_cls 397 456 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0455 546 SMART WRKY_cls 224 282 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0455 546 MobiDBLite consensus disorder prediction 469 493 - -
Cone3ag0455 546 MobiDBLite consensus disorder prediction 274 293 - -
Cone3ag0455 546 MobiDBLite consensus disorder prediction 305 380 - -
Cone3ag0455 546 Gene3D WRKY domain 384 450 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0455 546 Gene3D WRKY domain 212 284 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0455 546 MobiDBLite consensus disorder prediction 215 229 - -
Cone3ag0455 546 MobiDBLite consensus disorder prediction 1 30 - -
Cone3ag0455 546 MobiDBLite consensus disorder prediction 305 355 - -
Cone3ag0455 546 MobiDBLite consensus disorder prediction 279 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0479 Cone-Chr16:6955697 Cone3ag0455 Cone-Chr3:2192890 7.51E-74 dispersed
Cone3ag0455 Cone-Chr3:2192890 Cone4ag0075 Cone-Chr4:366501 4.61E-135 dispersed
Cone3ag1328 Cone-Chr3:32232091 Cone3ag0455 Cone-Chr3:2192890 2.53E-21 dispersed
Cone8ag1424 Cone-Chr8:11102295 Cone3ag0455 Cone-Chr3:2192890 2.31E-21 dispersed
Cone10ag0424 Cone-Chr10:1965020 Cone3ag0455 Cone-Chr3:2192890 5.92e-317 wgd
Cone10ag0319 Cone-Chr10:1518014 Cone3ag0455 Cone-Chr3:2192890 1.96E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45792 PF03330 DPBB_1 3.60E-21 CL0199 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0455 K13424 - rcu:8263140 484.952