Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0468 ATGGAGAACAAAGGGAGTATTTTGATGGATCGCTATGAATTAGGAAGGTTGCTAGGCCAGGGAACCTTTGCTAAGGTTTACTATGCAAAAAACGTCGAAACTGGCATGACTGTGGCCATTAAGGTCATCGACAAAGAGAAGATCCTGAAGGTTGGATTGATTGATCAGATTAAGAGAGAAATTTTTGTGATGAGACTGGTTCGGCATCCTAATGTGGTGGAGCTTTATGAGGTGATGGCCAGCAAAACCAAGATTTACGTTGTCATGGAGTATGTTAAAGGGGGTGAGCTATTCAACAAGGTAGCCAAAGGAAAGCTCAAGGAAGCTGCTGCGAGGAAGTATTTCCAGCAACTGATCAGCGCTGTTGATTACTGTCACAGTAGGGGGGTCTATCATCGGGATTTAAAACCAGAGAACCTACTGTTAGATGAGCATGGTAATCTAAAGGTTTCTGATTTTGGGTTGAGTGCCTTTGCTGAATCTAAACGCCAGGATGGACTGCTCCATACAACATGTGGGACCCCTGCCTATGTTGCTCCGGAAGTGATTAACAGAAGAGGCTATGATGGATCGAAAGCTGATATTTGGTCATGTGGGGTGATCCTATTTGTTCTTCTGGCAGGTTATCTTCCATTCAATGACCCAAATTTGATGGAAATGTATAGGAAGATTGGTAAGGCGGAATTTACATTTCCTAACTGGTTCACGCCGGAGGTGCGCAGGTTGCTGTCAAAAATATTGGATCCCAACCCAAACACCAGGATATCTATGGCTCAGATAATGGAAAGTTCTTGGTTCAGAAAGGGTTTACACCCTAAACCTCAACTTAATGCGACAGAAGGGAAAGAAATAGTCCCTTTTGATGCCAATGCATCATTTGAGCTTAACGAGAATAGCAGTGCTCTTGGAGAGGGGAAGCAAGAGTCGGCAAGGCCATCTAATTTGAATGCTTTTGAAATTATATCCTTTTCTGCAGGATTTGACCTGTCTGGTTTGTTCGAGGAGACTCAGAAAAAGAGAAAAGTACGATTCACATCCAACAAGAGTGCCTCCACTATCATCTCCAGGCTGGAAGAAATCGCAAAGCGTTTAAGATTAAAGGTGAAAAAGAAAGATGGCGGGTTGTTAAAAATCGAAGGGTCCAAGGAAGGGCGAAAAGGAGCCTTAGCCATTGATGCAGAGCTATTTGAGATCACCCCATTATGCCATGTGGTGGAAATGAAGAAGTCGAATGGAGATACATTGGAATATCAGAAGATAATGGGCGAGGAGATTCGACCAGCTCTCAAAGACATTGTTTGGGCTTGGCAAGGGGAGCAAAGCCAGGAACAAGTACCGGTTATAGAAGAGCAAGTACAAACATTAGCAGCCACCTCACGCACTACTGCCTATGTAGATCAAATGCCTGTCTGA 1413 43.88 MENKGSILMDRYELGRLLGQGTFAKVYYAKNVETGMTVAIKVIDKEKILKVGLIDQIKREIFVMRLVRHPNVVELYEVMASKTKIYVVMEYVKGGELFNKVAKGKLKEAAARKYFQQLISAVDYCHSRGVYHRDLKPENLLLDEHGNLKVSDFGLSAFAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGSKADIWSCGVILFVLLAGYLPFNDPNLMEMYRKIGKAEFTFPNWFTPEVRRLLSKILDPNPNTRISMAQIMESSWFRKGLHPKPQLNATEGKEIVPFDANASFELNENSSALGEGKQESARPSNLNAFEIISFSAGFDLSGLFEETQKKRKVRFTSNKSASTIISRLEEIAKRLRLKVKKKDGGLLKIEGSKEGRKGALAIDAELFEITPLCHVVEMKKSNGDTLEYQKIMGEEIRPALKDIVWAWQGEQSQEQVPVIEEQVQTLAATSRTTAYVDQMPV 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2270645 2273110 + Conep03aG0048300.1 Cone3ag0468 433927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0468 470 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0468 470 Gene3D Transferase(Phosphotransferase) domain 1 92 271 - -
Cone3ag0468 470 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Cone3ag0468 470 Gene3D Kinase associated domain 1, KA1 310 435 - -
Cone3ag0468 470 FunFam Non-specific serine/threonine protein kinase 310 434 - -
Cone3ag0468 470 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Cone3ag0468 470 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0468 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0468 470 Pfam NAF domain 312 370 IPR004041 GO:0007165(InterPro)
Cone3ag0468 470 SUPERFAMILY Protein kinase-like (PK-like) 8 275 IPR011009 -
Cone3ag0468 470 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 427 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone3ag0468 470 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cone3ag0468 470 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165(InterPro)
Cone3ag0468 470 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0468 470 FunFam Non-specific serine/threonine protein kinase 2 289 - -
Cone3ag0468 470 CDD STKc_SnRK3 11 265 - -
Cone3ag0468 470 CDD CIPK_C 316 430 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0422 Cone-Chr16:6591522 Cone3ag0468 Cone-Chr3:2270645 2.49E-179 dispersed
Cone20ag0325 Cone-Chr20:1450077 Cone3ag0468 Cone-Chr3:2270645 9.41E-175 dispersed
Cone2ag0573 Cone-Chr2:3318429 Cone3ag0468 Cone-Chr3:2270645 1.73E-184 dispersed
Cone3ag0468 Cone-Chr3:2270645 Cone5ag1047 Cone-Chr5:4584453 1.14E-218 dispersed
Cone3ag0468 Cone-Chr3:2270645 Cone3ag0471 Cone-Chr3:2291342 7.63E-133 proximal
Cone10ag0437 Cone-Chr10:2031148 Cone3ag0468 Cone-Chr3:2270645 2.05E-303 wgd
Cone19ag1441 Cone-Chr19:9385129 Cone3ag0468 Cone-Chr3:2270645 1.52E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82658 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0468 K07198 - cit:102619997 718.383