Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0483 ATGAAGAACACCCACAAGCATCGTCTTGCTTCTGCCTCCATCTTCATTTATCTGGCCTTCACAGCTCGACTGATTTTAGCAGCAAATTATACCCCGGCCGAAGTCATCCTTCTCAATTGTGGAGGTCCTCCTCAAAGTAGCGATTCTGATGGTCGAAAATGGACCTCCGATGTCGATTCCCGGTTTATCGTGGCAGCCGGGAATTCTGTCACCTCGGAAGCTGCTACTCAGGACCCTTCAGTATCCGTGGTCCCTTACATGACCTCCCGTGTTTTCCCGTCAAACTTCACCTACAGTTTCCCCGTCGTAGCCGGCCGTAAGTTTGTCCGCCTCTACTTCTATCCTTCTTCTTACGGAGGCCTTAACGCTTCTAACGCACTCTTCTCTGTCACCGCCCAGTCTTTTACTCTCCTTAAGAACTTCAGTGCTCTTCAGACCACACAAGCGTTGAATTATGACTTTATCATCAAGGAATATGTAGTCAATGTTGGCGGAGATACATTGAACATAACTTTCAATCCATCGCCCACTACTTCCAATTCATTCGCTTTTGTTAATGGGATTGAAGTTGTGTCGATGCCTGATATCTATAGTGAGACTGATGGAACTGCGATGATTGTTGGTCAATCTTCTTCATTCACTGTCGACAACTACACTGCCCTTGAGAATGTTTACCGCTTGAATGTAGGAGGGAATGATATTTCACCCTCAGCTGATACAGGCCTCTTCCGGTCATGGAGTGACGATTCCGCCTACATCTTTGGGGCGATGCTTGGGATCACCATGGCTGCGGATCCAAACATCACAATCAACTATCCATCTGGTATTCCGAGTTATGTTGCACCTGTCGACGTTTATTCCACTGCTAGAGCAATGGGACCAAACAATAATGTCAACCTTAATTCCAATTTGACTTGGATCTTTTCAGTTGATTCAGGATTCTTTTACCTAGTCCGACTCCATTTTTGTGAGGTTTTTGTACACATTACCAAGGTGAATCAAAGAGTATTTGATATCTTCCTCAACAATCAAACTGCCATGCCTGGGGCTGATGTTGTTGCCTGGGCAGGAAAGAGTGAAGTTCCTGTTTTCAAGGATTTTGTGGTCTCTGTTCTGAGTGGGAGCCCACAGCAGGATCTGTGGCTCACGCTTCATCCAGACACAGCGACAGACCCCATGTATTATAATGCCATCTTGAACGGAGTGGAAATATTCAAAATCAATGACACGAAGGGTAATCTTGGAGGCACGAATCCTATTCCATCACCTAAACAGGACAGGATTAAGCCAATATCGCCACCACCTGCTCCTGTTAAATCAAAGAATCAATCAGCAGTTATTGGAGGGGGTGTTGGTGGTGGAATTGTGTTGGCCCTTTTGATTGGCATCTTTGTCGTTGCTGCTGCTCGCCGTCGTGGAAAGAGGAAAGAGTCAAGTGGCAGTGAAGGGCCTTCTGGATGGCTTCCTCTTTCTCTATATGGGAATTCACACTCTGCCGGTTCCGCCAAGACTAACACAACCGGCAGTTATGCCTCCTCCATACCTTCCAACCTCTGCCGCCACTTTTCATTTGCCGAGATCAAGGCTGCCACCAAGAACTTTAATGAGTCTTTGGTTCTCGGGGTGGGAGGTTTTGGCAAGGTATACAAGGGTGAAATCAATGGTGGAAGTGGAACGATCACAGTTGCAATCAAGCGTGGGAACCCACTCTCCGAGCAAGGGGTGCATGAGTTTCAAACTGAAATCGAAATGCTCTCAAAACTCCGACATCGCCACCTGGTTTCACTGATTGGCTATTGTGAAGAGAACTGTGAAATGATTCTTGTTTACGATTACATGGCTTATGGAACACTGCGAGAGCATCTATACAAGTCCCAAAAGCCCCCGTTACCTTGGAAGCAAAGGCTTGAGATATGCATCGGTGCTGCCCGAGGCCTACACTATCTCCACACGGGTGCGAAGCACACTATCATTCACCGAGATGTTAAGACAACCAACATTCTTTTAGATGAGAAGTGGGTGGCAAAGGTCTCTGATTTTGGTCTGTCAAAGACGGGTCCTACACTGGATAATACACATGTTAGCACTGTCGTGAAGGGTAGTTTTGGCTACTTGGATCCGGAGTACTTCCGAAGGCAGCAGTTGACAGACAAGTCTGATGTCTACTCATTTGGAGTTGTTCTTTTCGAGATATTGTGTGCTCGGCCAGCTCTGAACCCGGCCCTATCTAGAGAGCAGGTGAGCTTGGCGGAATGGGCTGCACATTGCCAGAGGAAAGGCATGCTGGACCAGATAATTGACCCTCATCTCAAGGGGAAGATAGCGCCCGAATGTCTCAAGAATTTTGCTGAGACAGCAATGAAGTGTGTGGCTGATCAGGGCATAGAAAGGCCATCAATGGGTGATGTCCTGTGGAACCTGGAGTTTGCTTTGCAGCTGCAGGAGAGTGCAGAAGAGAGTGGCGTTGTAAGCCGGTCCATTGATATCAAGGAGGACACTGAATTTGAAGTAGCTTTGAAAGGGAAGAAGGATCCGAATGCATTCGACAGTAATGTAACAGACTCGAGGAGCAGCGGAATGAGTATGAGCATCGGGGGTCGAAGCCTTGCCAGTGAAGACTCCGATGGACTCACACCAAGTACTGTATTCTCACAGATTATGAACCCAAAAGGCCGCTGA 2679 47.41 MKNTHKHRLASASIFIYLAFTARLILAANYTPAEVILLNCGGPPQSSDSDGRKWTSDVDSRFIVAAGNSVTSEAATQDPSVSVVPYMTSRVFPSNFTYSFPVVAGRKFVRLYFYPSSYGGLNASNALFSVTAQSFTLLKNFSALQTTQALNYDFIIKEYVVNVGGDTLNITFNPSPTTSNSFAFVNGIEVVSMPDIYSETDGTAMIVGQSSSFTVDNYTALENVYRLNVGGNDISPSADTGLFRSWSDDSAYIFGAMLGITMAADPNITINYPSGIPSYVAPVDVYSTARAMGPNNNVNLNSNLTWIFSVDSGFFYLVRLHFCEVFVHITKVNQRVFDIFLNNQTAMPGADVVAWAGKSEVPVFKDFVVSVLSGSPQQDLWLTLHPDTATDPMYYNAILNGVEIFKINDTKGNLGGTNPIPSPKQDRIKPISPPPAPVKSKNQSAVIGGGVGGGIVLALLIGIFVVAAARRRGKRKESSGSEGPSGWLPLSLYGNSHSAGSAKTNTTGSYASSIPSNLCRHFSFAEIKAATKNFNESLVLGVGGFGKVYKGEINGGSGTITVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAYGTLREHLYKSQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEILCARPALNPALSREQVSLAEWAAHCQRKGMLDQIIDPHLKGKIAPECLKNFAETAMKCVADQGIERPSMGDVLWNLEFALQLQESAEESGVVSRSIDIKEDTEFEVALKGKKDPNAFDSNVTDSRSSGMSMSIGGRSLASEDSDGLTPSTVFSQIMNPKGR 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2361441 2364903 + Conep03aG0049800.1 Cone3ag0483 433942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0483 892 FunFam FERONIA receptor-like kinase 35 194 - -
Cone3ag0483 892 MobiDBLite consensus disorder prediction 844 892 - -
Cone3ag0483 892 MobiDBLite consensus disorder prediction 415 440 - -
Cone3ag0483 892 FunFam Receptor-like protein kinase FERONIA 613 823 - -
Cone3ag0483 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0483 892 ProSitePatterns Protein kinases ATP-binding region signature. 540 565 IPR017441 GO:0005524(InterPro)
Cone3ag0483 892 SUPERFAMILY Protein kinase-like (PK-like) 508 809 IPR011009 -
Cone3ag0483 892 Gene3D Transferase(Phosphotransferase) domain 1 613 832 - -
Cone3ag0483 892 Pfam Protein tyrosine and serine/threonine kinase 539 804 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0483 892 ProSiteProfiles Protein kinase domain profile. 534 810 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0483 892 Gene3D - 33 194 - -
Cone3ag0483 892 Gene3D - 220 408 - -
Cone3ag0483 892 PANTHER OS03G0124300 PROTEIN-RELATED 9 471 IPR045272 GO:0004714(InterPro)|GO:0006468(InterPro)
Cone3ag0483 892 MobiDBLite consensus disorder prediction 850 892 - -
Cone3ag0483 892 FunFam FERONIA receptor-like kinase 219 408 - -
Cone3ag0483 892 Pfam Malectin-like domain 38 407 IPR024788 -
Cone3ag0483 892 FunFam receptor-like protein kinase FERONIA 496 612 - -
Cone3ag0483 892 CDD STKc_IRAK 540 808 - -
Cone3ag0483 892 SMART serkin_6 534 810 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0483 892 Gene3D Phosphorylase Kinase; domain 1 496 612 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0496 Cone-Chr2:2687252 Cone3ag0483 Cone-Chr3:2361441 8.69E-234 dispersed
Cone2ag0498 Cone-Chr2:2703256 Cone3ag0483 Cone-Chr3:2361441 3.06E-197 dispersed
Cone2ag0499 Cone-Chr2:2711354 Cone3ag0483 Cone-Chr3:2361441 1.48E-201 dispersed
Cone3ag0483 Cone-Chr3:2361441 Cone3ag0691 Cone-Chr3:3533339 3.59E-291 dispersed
Cone3ag0483 Cone-Chr3:2361441 Cone3ag0487 Cone-Chr3:2395717 4.06E-66 proximal
Cone10ag0450 Cone-Chr10:2090358 Cone3ag0483 Cone-Chr3:2361441 0 wgd
Cone19ag1457 Cone-Chr19:9464268 Cone3ag0483 Cone-Chr3:2361441 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82662 PF00248 Aldo_ket_red 1.00E-27 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0483 - - - 0.0