Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0485 ATGAAGCTACTATTCTTCTCTGTGCCACTTCTCCTCTTACTTGTGTATTTCCCTTTCCATGTTTCATCTGACCTAAACTCAGACAAGCAAGCCCTTCTTGATTTCATTGCCGCTGTTCCTCACGGTCGTAAAGTTAACTGGAATCAATCTAGCTCAGTTTGCTCTTCTTGGGTTGGCATCACTTGTACAAAAGATAAGGCAAGAGTGATGGCTGTGCGGCTCCCTGCTGTTGGCTTGTATGGTGCACTTCCGGCCAACACACTTTCAAGGCTTGATGCTCTCAGAATCCTTAGCCTTCGGTCTAACCGTCTCAATGGGAGCCTTCCATCTGATGTTTTATCCATTCCGTCCCTCCAAAACTTATACCTTCAGCATAACAACTTTTCGGGCGAGATCCCTCCTTCCTTATCTCCCCACTTCACCTTTCTGGATCTGTCATTCAACATCCTCACAGGCCACATTCCAGCAGCAGTTCAAAATTTGTCACATCTCACTAGCCTCATCCTTCAAAATAATTCTCTTTCTGGACCTATACCTGATGTGCATCTCCCTGGGCTTAGGAATCTGAACTTGAGCTATAACAATCTAAATGGCACAATTCCTTCTGCTCTGAAAACATTCCCTCCATCCTCTTTCGAAGGGAATTCTTTGCTATGTGGAGCACCACTAAGCCAGTGCTCTTCGGTCATACCATCACCCTCCCCTTCTCCCACTTATATACCCCCTACCCCACCTGCCTCACCAAAACCAAAGAGCAAGAGGAAACTCAATAGTCGAGCAATTATTGCCATTGCAGTGGGGGGTTCTGCATTACTGTTTGTCCTATTTCTGATAACACTAGTATGCTGTTTGAAGAAGAAAGATAATGAAGGTACTGGTGCGGTGAAAGGGAAGAGTAAAAGGAGCGAGCAACCAAAGGAGGACTTTGGGAGCGGGGTGCAAGAGGCTGAGAAGAACAAGTTGGTTTTCTTTGAAGGCTGTTCTTATAATTTTGACCTAGAGGATTTGTTGAGAGCTTCTGCAGAGGTGCTTGGAAAGGGGAGTTATGGGACCACTTATAAGGCTATCTTGGAGGAAGGAACGACTGTAGTTGTGAAGAGGTTGAAAGAAGTGGTGGTTGGTAAAAGGGAATTCGAACAGCAGATGGAGATTGTCGGGAGGGTGGGTCAGCACCCAAATGTCATGCCACTCCGCGCTTATTACTATTCCAAGGATGAGAAACTTTTGGTTTATGATTACGTACCAGCTGGTAGTTTCTCTGCATTACTGCATGGAAACAAATTAAGCGGACAGACACCCCCGGACTGGGAAACCAGGGTAAAAATCTCACTTGGATTTGCAAGGGGCATTGCACATATCCATTCCTCAAGCGGTGGCAAACTTGTCCATGGCAACATCAAATCCTCTAATGTCCTTCTTACACAGGACCTCAATGGATGCATCTCAGATTTCGGCCTAACATCTGTCATCAACTTCCCCACCGTGCCATCTAGAAGTGCAGGCTACCGAGCTCCTGAGGTAATTGACATGCGAAAGTCAACTCAAAAGTCAGATGTATACAGCTTGGGCGTAGTTATTCTAGAGATGTTAACAGGAAAAGCACCGGTTCAGTCCCCAGGGCGAGATGATGTTGCGGACCTTCCCAGGTGGGTCCAGTCTGTGGTCAGAGAGGAGTGGACCTCAGAAGTATTTGATATAGAGCTAATGAAGTATCAGAATATAGAAGAAGAGTTGGTCCAAATGCTTCAGATAGCAATGGCATGCGTAGCCAGGATGCCTGATATGAGACCTTCCATGGATGAAGTTGTTAGGATGATCGAAGAAATCAGGCCGTCTGGTTCCGAAACTCGGCCTTCTTCTGAGGACAACAAATCCAAGGACGAGTTAACTACTCAGACCACACCATAA 1908 46.12 MKLLFFSVPLLLLLVYFPFHVSSDLNSDKQALLDFIAAVPHGRKVNWNQSSSVCSSWVGITCTKDKARVMAVRLPAVGLYGALPANTLSRLDALRILSLRSNRLNGSLPSDVLSIPSLQNLYLQHNNFSGEIPPSLSPHFTFLDLSFNILTGHIPAAVQNLSHLTSLILQNNSLSGPIPDVHLPGLRNLNLSYNNLNGTIPSALKTFPPSSFEGNSLLCGAPLSQCSSVIPSPSPSPTYIPPTPPASPKPKSKRKLNSRAIIAIAVGGSALLFVLFLITLVCCLKKKDNEGTGAVKGKSKRSEQPKEDFGSGVQEAEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEEGTTVVVKRLKEVVVGKREFEQQMEIVGRVGQHPNVMPLRAYYYSKDEKLLVYDYVPAGSFSALLHGNKLSGQTPPDWETRVKISLGFARGIAHIHSSSGGKLVHGNIKSSNVLLTQDLNGCISDFGLTSVINFPTVPSRSAGYRAPEVIDMRKSTQKSDVYSLGVVILEMLTGKAPVQSPGRDDVADLPRWVQSVVREEWTSEVFDIELMKYQNIEEELVQMLQIAMACVARMPDMRPSMDEVVRMIEEIRPSGSETRPSSEDNKSKDELTTQTTP 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2368876 2373339 - Conep03aG0050000.1 Cone3ag0485 433944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0485 635 ProSitePatterns Protein kinases ATP-binding region signature. 344 375 IPR017441 GO:0005524(InterPro)
Cone3ag0485 635 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 414 620 - -
Cone3ag0485 635 Gene3D Ribonuclease Inhibitor 182 227 IPR032675 -
Cone3ag0485 635 FunFam pollen receptor-like kinase 1 306 413 - -
Cone3ag0485 635 PANTHER OS05G0588300 PROTEIN 7 623 IPR050994 -
Cone3ag0485 635 ProSiteProfiles Protein kinase domain profile. 338 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0485 635 Gene3D Phosphorylase Kinase; domain 1 305 413 - -
Cone3ag0485 635 Pfam Protein kinase domain 342 604 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0485 635 Pfam Leucine Rich Repeat 186 206 IPR001611 GO:0005515(InterPro)
Cone3ag0485 635 Pfam Leucine Rich Repeat 163 180 IPR001611 GO:0005515(InterPro)
Cone3ag0485 635 Pfam Leucine Rich Repeat 117 137 IPR001611 GO:0005515(InterPro)
Cone3ag0485 635 Pfam Leucine Rich Repeat 141 161 IPR001611 GO:0005515(InterPro)
Cone3ag0485 635 MobiDBLite consensus disorder prediction 292 312 - -
Cone3ag0485 635 SUPERFAMILY Protein kinase-like (PK-like) 342 607 IPR011009 -
Cone3ag0485 635 MobiDBLite consensus disorder prediction 607 628 - -
Cone3ag0485 635 Gene3D Transferase(Phosphotransferase) domain 1 415 633 - -
Cone3ag0485 635 CDD STKc_IRAK 344 609 - -
Cone3ag0485 635 SUPERFAMILY L domain-like 38 224 - -
Cone3ag0485 635 FunFam Leucine-rich repeat receptor-like protein kinase 138 226 - -
Cone3ag0485 635 MobiDBLite consensus disorder prediction 607 635 - -
Cone3ag0485 635 Gene3D Ribonuclease Inhibitor 25 181 IPR032675 -
Cone3ag0485 635 FunFam Leucine-rich repeat receptor-like protein kinase 27 137 - -
Cone3ag0485 635 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0765 Cone-Chr16:8626927 Cone3ag0485 Cone-Chr3:2368876 4.32E-153 dispersed
Cone2ag0274 Cone-Chr2:1410258 Cone3ag0485 Cone-Chr3:2368876 6.18E-150 dispersed
Cone2ag0777 Cone-Chr2:33756899 Cone3ag0485 Cone-Chr3:2368876 5.20E-127 dispersed
Cone3ag0198 Cone-Chr3:1023787 Cone3ag0485 Cone-Chr3:2368876 6.83E-109 dispersed
Cone3ag0485 Cone-Chr3:2368876 Cone8ag0259 Cone-Chr8:1498559 3.42E-157 dispersed
Cone10ag0452 Cone-Chr10:2098194 Cone3ag0485 Cone-Chr3:2368876 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82663 PF02330 MAM33 3.10E-47 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0485 - - - 0.0