Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0487 ATGCTGAAGCATAGAGTTGGGGCGTATCTGGTTATCCTGTTGTGTTTCTGCTTCACGCTCCTCTCGGTTGCACAAAAAACACATCCTTTGGAAGTGAGTGCTCTGCTAGCAGTACAGAGAAAACTTGTTGATCCAATGAACCACCTTACAAGCTGGAACAACCGAGGGGATCCCTGCACGTCAAATTGGACTGGTGTTTCATGTAATGCTGGAACTGATAATTACTTGCATATCAGACACCTCCATCTACTGAACATGAATCTCTCTGGAGTTTTAGCACCTGAGATTGGCCAACTCTCTCGTCTTCAAATATTAGATTTCATGTGGAATCACCTAACCGGAAACATACCCCGGGAGATTGGTTATATTGCATCCTTGAAATTATTGCTCTTAAATGGCAACAAGCTATCAGGCCCTCTTCCTGAAGAATTGGGTTACCTTTCTTATCTAAACAGACTCCAAATAGACGAGAACAAAATTTCAGGGCCGATACCAAAATCATTCGCAAATATGACAATGATGAAGCACCTCCACATGAATAACAACTCCTTAAGCGGTGAAGTTCCATCTGAGCTTTCCAGATTACCCCATTTACTTCACCTGCTTGTGGATAACAATCACTTATCGGGATATCTTCCGGCAGAATTCTCCAACCTTCCCAAGCTGCGCATACTACAACTTGATAACAACAACTTCAGAGGGGAAATTCCAGTAACTTATGGAAACCTTACTGCAGTAGTGAAATTAAGTCTGAGGAACTGCAGCTTGGAGGGACCTATTCTTGATCTAAGCAGGATACAAAATCTTAGTTACTTGGATCTTAGCAGGAATCATTTTTCTGGACCCATACCATCAAATAAGCTGTCTGAAAATGTCACGACAATTGATCTCTCATATAACAACCTCAATGGATCTATACCCGAAAGTTTCTCAGATCTTCCTTTCCTTCAAAGACTGTCGCTCGAAAATAATGCACTGGGTGGTTCTGTCCCTGCTAAACTTTGGAAGAATATGGCCTTCGCTGTAAATGCTACACTCCAAATTGATCTCCGGAACAATTTGTTCTCAAACGTTTCAGGTGATCTAAATCCTCCAGCTAATGTCAGCTTAAGGCTTGCAGGCAATCCAATCTGCAAAAGTTTAAACGTAGAAAATAGTGGCCAGTTCTGTGGACCGGTAAGTGTAGAGTACGAGCTGCATGGGAACTCACTTAACTCAAATCCAATCTGTCATGTGGAAGCATGTCCAGTGGATGTATTCTTTGAATGTGTTTTAGCATCCCCTGCATCATGCTTTTGTGCCTTACCACTTAGGATCGGATATCGTCTCAAGAGTCCAAGTTTCTCTTATTTTCCTCCGTATCAGCATTTGTTTGAACAGTATCTGACTGATTCTCTCAAATTGAACCTGTATCAACTATCAATCGATTCATATTTCTGGGAAGGGCGTCGCCTAAAGATGTATTTGAAGATTTTCCCTCCATTTAGTCCCAGCACTAGTGTGTTTAATACAACTGAGGAGAAGCGAATTATAGACATGTATACATCATGGAATTTTACGCCCACTGATTTCTTTGGACCGTATGAGCTTCTCAACTATACGGTGTTGGACCCTTTTTCAAACTCAAACACTACGGTGAGTTTTATGACACAAAAAGCAAAGATTGGAGGTGGCATCTTGGCGGCAATTGTGTTAGGGGCCATTGTCTGTGTTGGTATGGTCGCTGCAGTGATAATATTTGTGCGACGAGGGCGTGTGAAAAACCAGCACAGTTTGTCGAGGAAAAGCCAATCCTCAAAGATTGGTATGAAAATCGATGGCGTGAAATCGTTCACCCTGAAGGAGATGGTATTAGCTACTCAAAACTTCAACAGCTCAAGTCAAGTTGGGCAAGGAGGTTATGGCAAGGTTTACAGAGGCATCTTATGGGACAATTCAACAGTAGCGATAAAGCGCGCTGCAGAAGGATCCTTACAAGGCACTAAAGAATTTTTGACCGAGATTGAACTTTTATCCAGGCTACATCACCGGAACTTGGTTTCATTGATTGGATACTGTGACGAAGATGGGGAGCAGATGCTGGTTTACGAGTTCATGCCTAATGGCACTTTGAGGAACTGGCTGTCTGGTAAAAGTGAAGAAAACCTGAGTTTTGGGACGAGATTGCAAATAGCACTGGGTTCAGCAAAAGGCATTCTTTATCTGCACAGCGAAGCAAACCCTCCGATATTCCACAGAGACATCAAAGCAAGCAACATACTTCTGGACGACAGGCTCAATGCTAAAGTTGCCGATTTTGGGCTGTCCCGGCTTGCCCCCGTCCTAGATGATGAAGGGTTTGTTCCTCGATATATATCTACTGTTGTCAAGGGCACACCAGGGTACCTCGACCCAGAATACTTTCTGACCCATAAGTTGACGGACAAAAGTGACGTTTACAGCCTAGGAGTTGTATTTTTAGAGATCTTGACGGGTATGCAACCCATATCACATGGCAAGAACATCGTTCGAGAGGTGAATATGGCCCATCAGATGGGGATGATGTTCTCGATAATAGACAGCAGGATGGGTTCGTTTCCATCCGAATCTGTAGAAAAGTTTGTAGCGCTGGCACTGGCTTGTTGTCATGACAAACCAGAAGAACGGCCATGTATGCTGGATGTGGTGAGGGAGCTTGAAAACATTGTGAAGATGATGCCGGAAGACGGCAGCACCTTCTTCTCCTCAGAATGTAGTCCAAGTCGTGTGTATAATACTGGAAGCAATTCAGCATCAGGATCAGCATCAGTATCTTTGCTGAGCAAGGATCAGTCGATCAGCATATCAGGAAGTGATCTTGTGAGTGGTGTAGTGCCCACAATCAACCCTCGATGA 2874 43.53 MLKHRVGAYLVILLCFCFTLLSVAQKTHPLEVSALLAVQRKLVDPMNHLTSWNNRGDPCTSNWTGVSCNAGTDNYLHIRHLHLLNMNLSGVLAPEIGQLSRLQILDFMWNHLTGNIPREIGYIASLKLLLLNGNKLSGPLPEELGYLSYLNRLQIDENKISGPIPKSFANMTMMKHLHMNNNSLSGEVPSELSRLPHLLHLLVDNNHLSGYLPAEFSNLPKLRILQLDNNNFRGEIPVTYGNLTAVVKLSLRNCSLEGPILDLSRIQNLSYLDLSRNHFSGPIPSNKLSENVTTIDLSYNNLNGSIPESFSDLPFLQRLSLENNALGGSVPAKLWKNMAFAVNATLQIDLRNNLFSNVSGDLNPPANVSLRLAGNPICKSLNVENSGQFCGPVSVEYELHGNSLNSNPICHVEACPVDVFFECVLASPASCFCALPLRIGYRLKSPSFSYFPPYQHLFEQYLTDSLKLNLYQLSIDSYFWEGRRLKMYLKIFPPFSPSTSVFNTTEEKRIIDMYTSWNFTPTDFFGPYELLNYTVLDPFSNSNTTVSFMTQKAKIGGGILAAIVLGAIVCVGMVAAVIIFVRRGRVKNQHSLSRKSQSSKIGMKIDGVKSFTLKEMVLATQNFNSSSQVGQGGYGKVYRGILWDNSTVAIKRAAEGSLQGTKEFLTEIELLSRLHHRNLVSLIGYCDEDGEQMLVYEFMPNGTLRNWLSGKSEENLSFGTRLQIALGSAKGILYLHSEANPPIFHRDIKASNILLDDRLNAKVADFGLSRLAPVLDDEGFVPRYISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEILTGMQPISHGKNIVREVNMAHQMGMMFSIIDSRMGSFPSESVEKFVALALACCHDKPEERPCMLDVVRELENIVKMMPEDGSTFFSSECSPSRVYNTGSNSASGSASVSLLSKDQSISISGSDLVSGVVPTINPR 957
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 2395717 2401873 + Conep03aG0050200.1 Cone3ag0487 433946
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0487 957 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Cone3ag0487 957 Gene3D Ribonuclease Inhibitor 289 380 IPR032675 -
Cone3ag0487 957 Gene3D Ribonuclease Inhibitor 30 184 IPR032675 -
Cone3ag0487 957 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 29 189 - -
Cone3ag0487 957 ProSitePatterns Protein kinases ATP-binding region signature. 629 651 IPR017441 GO:0005524(InterPro)
Cone3ag0487 957 Gene3D Ribonuclease Inhibitor 185 288 IPR032675 -
Cone3ag0487 957 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 191 283 - -
Cone3ag0487 957 Pfam Protein kinase domain 624 889 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0487 957 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515(InterPro)
Cone3ag0487 957 Pfam Leucine Rich Repeat 125 147 IPR001611 GO:0005515(InterPro)
Cone3ag0487 957 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 699 907 - -
Cone3ag0487 957 PANTHER RECEPTOR-LIKE PROTEIN 55 47 893 - -
Cone3ag0487 957 ProSiteProfiles Protein kinase domain profile. 623 907 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0487 957 Gene3D Phosphorylase Kinase; domain 1 584 698 - -
Cone3ag0487 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0487 957 Gene3D Transferase(Phosphotransferase) domain 1 699 907 - -
Cone3ag0487 957 SUPERFAMILY L domain-like 28 331 - -
Cone3ag0487 957 SMART serkin_6 623 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0487 957 SUPERFAMILY Protein kinase-like (PK-like) 608 917 IPR011009 -
Cone3ag0487 957 CDD STKc_IRAK 629 895 - -
Cone3ag0487 957 FunFam Leucine-rich repeat protein kinase family protein 587 698 - -
Cone3ag0487 957 Pfam Leucine rich repeat 149 208 IPR001611 GO:0005515(InterPro)
Cone3ag0487 957 Pfam Leucine rich repeat 268 326 IPR001611 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0454 Cone-Chr10:2116669 Cone3ag0487 Cone-Chr3:2395717 0 dispersed
Cone1ag0793 Cone-Chr1:53896719 Cone3ag0487 Cone-Chr3:2395717 2.85E-247 dispersed
Cone3ag0487 Cone-Chr3:2395717 Cone5ag1032 Cone-Chr5:4499206 3.40E-236 dispersed
Cone3ag0483 Cone-Chr3:2361441 Cone3ag0487 Cone-Chr3:2395717 4.06E-66 proximal
Cone13ag1462 Cone-Chr13:10439336 Cone3ag0487 Cone-Chr3:2395717 7.50E-77 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82664 PF03107 C1_2 4.50E-10 CL0006 Cone PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0487 - - - 0.0