Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone3ag0487 | ATGCTGAAGCATAGAGTTGGGGCGTATCTGGTTATCCTGTTGTGTTTCTGCTTCACGCTCCTCTCGGTTGCACAAAAAACACATCCTTTGGAAGTGAGTGCTCTGCTAGCAGTACAGAGAAAACTTGTTGATCCAATGAACCACCTTACAAGCTGGAACAACCGAGGGGATCCCTGCACGTCAAATTGGACTGGTGTTTCATGTAATGCTGGAACTGATAATTACTTGCATATCAGACACCTCCATCTACTGAACATGAATCTCTCTGGAGTTTTAGCACCTGAGATTGGCCAACTCTCTCGTCTTCAAATATTAGATTTCATGTGGAATCACCTAACCGGAAACATACCCCGGGAGATTGGTTATATTGCATCCTTGAAATTATTGCTCTTAAATGGCAACAAGCTATCAGGCCCTCTTCCTGAAGAATTGGGTTACCTTTCTTATCTAAACAGACTCCAAATAGACGAGAACAAAATTTCAGGGCCGATACCAAAATCATTCGCAAATATGACAATGATGAAGCACCTCCACATGAATAACAACTCCTTAAGCGGTGAAGTTCCATCTGAGCTTTCCAGATTACCCCATTTACTTCACCTGCTTGTGGATAACAATCACTTATCGGGATATCTTCCGGCAGAATTCTCCAACCTTCCCAAGCTGCGCATACTACAACTTGATAACAACAACTTCAGAGGGGAAATTCCAGTAACTTATGGAAACCTTACTGCAGTAGTGAAATTAAGTCTGAGGAACTGCAGCTTGGAGGGACCTATTCTTGATCTAAGCAGGATACAAAATCTTAGTTACTTGGATCTTAGCAGGAATCATTTTTCTGGACCCATACCATCAAATAAGCTGTCTGAAAATGTCACGACAATTGATCTCTCATATAACAACCTCAATGGATCTATACCCGAAAGTTTCTCAGATCTTCCTTTCCTTCAAAGACTGTCGCTCGAAAATAATGCACTGGGTGGTTCTGTCCCTGCTAAACTTTGGAAGAATATGGCCTTCGCTGTAAATGCTACACTCCAAATTGATCTCCGGAACAATTTGTTCTCAAACGTTTCAGGTGATCTAAATCCTCCAGCTAATGTCAGCTTAAGGCTTGCAGGCAATCCAATCTGCAAAAGTTTAAACGTAGAAAATAGTGGCCAGTTCTGTGGACCGGTAAGTGTAGAGTACGAGCTGCATGGGAACTCACTTAACTCAAATCCAATCTGTCATGTGGAAGCATGTCCAGTGGATGTATTCTTTGAATGTGTTTTAGCATCCCCTGCATCATGCTTTTGTGCCTTACCACTTAGGATCGGATATCGTCTCAAGAGTCCAAGTTTCTCTTATTTTCCTCCGTATCAGCATTTGTTTGAACAGTATCTGACTGATTCTCTCAAATTGAACCTGTATCAACTATCAATCGATTCATATTTCTGGGAAGGGCGTCGCCTAAAGATGTATTTGAAGATTTTCCCTCCATTTAGTCCCAGCACTAGTGTGTTTAATACAACTGAGGAGAAGCGAATTATAGACATGTATACATCATGGAATTTTACGCCCACTGATTTCTTTGGACCGTATGAGCTTCTCAACTATACGGTGTTGGACCCTTTTTCAAACTCAAACACTACGGTGAGTTTTATGACACAAAAAGCAAAGATTGGAGGTGGCATCTTGGCGGCAATTGTGTTAGGGGCCATTGTCTGTGTTGGTATGGTCGCTGCAGTGATAATATTTGTGCGACGAGGGCGTGTGAAAAACCAGCACAGTTTGTCGAGGAAAAGCCAATCCTCAAAGATTGGTATGAAAATCGATGGCGTGAAATCGTTCACCCTGAAGGAGATGGTATTAGCTACTCAAAACTTCAACAGCTCAAGTCAAGTTGGGCAAGGAGGTTATGGCAAGGTTTACAGAGGCATCTTATGGGACAATTCAACAGTAGCGATAAAGCGCGCTGCAGAAGGATCCTTACAAGGCACTAAAGAATTTTTGACCGAGATTGAACTTTTATCCAGGCTACATCACCGGAACTTGGTTTCATTGATTGGATACTGTGACGAAGATGGGGAGCAGATGCTGGTTTACGAGTTCATGCCTAATGGCACTTTGAGGAACTGGCTGTCTGGTAAAAGTGAAGAAAACCTGAGTTTTGGGACGAGATTGCAAATAGCACTGGGTTCAGCAAAAGGCATTCTTTATCTGCACAGCGAAGCAAACCCTCCGATATTCCACAGAGACATCAAAGCAAGCAACATACTTCTGGACGACAGGCTCAATGCTAAAGTTGCCGATTTTGGGCTGTCCCGGCTTGCCCCCGTCCTAGATGATGAAGGGTTTGTTCCTCGATATATATCTACTGTTGTCAAGGGCACACCAGGGTACCTCGACCCAGAATACTTTCTGACCCATAAGTTGACGGACAAAAGTGACGTTTACAGCCTAGGAGTTGTATTTTTAGAGATCTTGACGGGTATGCAACCCATATCACATGGCAAGAACATCGTTCGAGAGGTGAATATGGCCCATCAGATGGGGATGATGTTCTCGATAATAGACAGCAGGATGGGTTCGTTTCCATCCGAATCTGTAGAAAAGTTTGTAGCGCTGGCACTGGCTTGTTGTCATGACAAACCAGAAGAACGGCCATGTATGCTGGATGTGGTGAGGGAGCTTGAAAACATTGTGAAGATGATGCCGGAAGACGGCAGCACCTTCTTCTCCTCAGAATGTAGTCCAAGTCGTGTGTATAATACTGGAAGCAATTCAGCATCAGGATCAGCATCAGTATCTTTGCTGAGCAAGGATCAGTCGATCAGCATATCAGGAAGTGATCTTGTGAGTGGTGTAGTGCCCACAATCAACCCTCGATGA | 2874 | 43.53 | MLKHRVGAYLVILLCFCFTLLSVAQKTHPLEVSALLAVQRKLVDPMNHLTSWNNRGDPCTSNWTGVSCNAGTDNYLHIRHLHLLNMNLSGVLAPEIGQLSRLQILDFMWNHLTGNIPREIGYIASLKLLLLNGNKLSGPLPEELGYLSYLNRLQIDENKISGPIPKSFANMTMMKHLHMNNNSLSGEVPSELSRLPHLLHLLVDNNHLSGYLPAEFSNLPKLRILQLDNNNFRGEIPVTYGNLTAVVKLSLRNCSLEGPILDLSRIQNLSYLDLSRNHFSGPIPSNKLSENVTTIDLSYNNLNGSIPESFSDLPFLQRLSLENNALGGSVPAKLWKNMAFAVNATLQIDLRNNLFSNVSGDLNPPANVSLRLAGNPICKSLNVENSGQFCGPVSVEYELHGNSLNSNPICHVEACPVDVFFECVLASPASCFCALPLRIGYRLKSPSFSYFPPYQHLFEQYLTDSLKLNLYQLSIDSYFWEGRRLKMYLKIFPPFSPSTSVFNTTEEKRIIDMYTSWNFTPTDFFGPYELLNYTVLDPFSNSNTTVSFMTQKAKIGGGILAAIVLGAIVCVGMVAAVIIFVRRGRVKNQHSLSRKSQSSKIGMKIDGVKSFTLKEMVLATQNFNSSSQVGQGGYGKVYRGILWDNSTVAIKRAAEGSLQGTKEFLTEIELLSRLHHRNLVSLIGYCDEDGEQMLVYEFMPNGTLRNWLSGKSEENLSFGTRLQIALGSAKGILYLHSEANPPIFHRDIKASNILLDDRLNAKVADFGLSRLAPVLDDEGFVPRYISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEILTGMQPISHGKNIVREVNMAHQMGMMFSIIDSRMGSFPSESVEKFVALALACCHDKPEERPCMLDVVRELENIVKMMPEDGSTFFSSECSPSRVYNTGSNSASGSASVSLLSKDQSISISGSDLVSGVVPTINPR | 957 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2395717 | 2401873 | + | Conep03aG0050200.1 | Cone3ag0487 | 433946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone3ag0487 | 957 | Pfam | Leucine rich repeat N-terminal domain | 31 | 69 | IPR013210 | - | |
Cone3ag0487 | 957 | Gene3D | Ribonuclease Inhibitor | 289 | 380 | IPR032675 | - | |
Cone3ag0487 | 957 | Gene3D | Ribonuclease Inhibitor | 30 | 184 | IPR032675 | - | |
Cone3ag0487 | 957 | FunFam | Probable LRR receptor-like serine/threonine-protein kinase At1g06840 | 29 | 189 | - | - | |
Cone3ag0487 | 957 | ProSitePatterns | Protein kinases ATP-binding region signature. | 629 | 651 | IPR017441 | GO:0005524(InterPro) | |
Cone3ag0487 | 957 | Gene3D | Ribonuclease Inhibitor | 185 | 288 | IPR032675 | - | |
Cone3ag0487 | 957 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 191 | 283 | - | - | |
Cone3ag0487 | 957 | Pfam | Protein kinase domain | 624 | 889 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone3ag0487 | 957 | Pfam | Leucine Rich Repeat | 221 | 243 | IPR001611 | GO:0005515(InterPro) | |
Cone3ag0487 | 957 | Pfam | Leucine Rich Repeat | 125 | 147 | IPR001611 | GO:0005515(InterPro) | |
Cone3ag0487 | 957 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 699 | 907 | - | - | |
Cone3ag0487 | 957 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 47 | 893 | - | - | |
Cone3ag0487 | 957 | ProSiteProfiles | Protein kinase domain profile. | 623 | 907 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone3ag0487 | 957 | Gene3D | Phosphorylase Kinase; domain 1 | 584 | 698 | - | - | |
Cone3ag0487 | 957 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 743 | 755 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone3ag0487 | 957 | Gene3D | Transferase(Phosphotransferase) domain 1 | 699 | 907 | - | - | |
Cone3ag0487 | 957 | SUPERFAMILY | L domain-like | 28 | 331 | - | - | |
Cone3ag0487 | 957 | SMART | serkin_6 | 623 | 899 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone3ag0487 | 957 | SUPERFAMILY | Protein kinase-like (PK-like) | 608 | 917 | IPR011009 | - | |
Cone3ag0487 | 957 | CDD | STKc_IRAK | 629 | 895 | - | - | |
Cone3ag0487 | 957 | FunFam | Leucine-rich repeat protein kinase family protein | 587 | 698 | - | - | |
Cone3ag0487 | 957 | Pfam | Leucine rich repeat | 149 | 208 | IPR001611 | GO:0005515(InterPro) | |
Cone3ag0487 | 957 | Pfam | Leucine rich repeat | 268 | 326 | IPR001611 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0454 | Cone-Chr10:2116669 | Cone3ag0487 | Cone-Chr3:2395717 | 0 | dispersed | |
Cone1ag0793 | Cone-Chr1:53896719 | Cone3ag0487 | Cone-Chr3:2395717 | 2.85E-247 | dispersed | |
Cone3ag0487 | Cone-Chr3:2395717 | Cone5ag1032 | Cone-Chr5:4499206 | 3.40E-236 | dispersed | |
Cone3ag0483 | Cone-Chr3:2361441 | Cone3ag0487 | Cone-Chr3:2395717 | 4.06E-66 | proximal | |
Cone13ag1462 | Cone-Chr13:10439336 | Cone3ag0487 | Cone-Chr3:2395717 | 7.50E-77 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
82664 | PF03107 | C1_2 | 4.50E-10 | CL0006 | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone3ag0487 | - | - | - | 0.0 |