Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0499 ATGACTTCAAGACCCATTGTTCCATTACAAGCAAGAGGCGAGGCAGCAATAGGTGGGGGTAACATCTCAAAACCCCAACAGAAGAAACCTGCACAAGCGGAAGGGAAAAACCGAAGAGCACTAGGCGATATAGGAAATGTCGTTCCTGCCCGAGGAGGGGTCGCGGATCCCACAAAGGCTAACCGACCGATCACCAGAAGCTTCTGTGCACAACTACTTGCTAATGCCCAAGCCGCTGCTGCTGCTGAAAACAACAAGAAACAAGTCCCTGTAAATGTAGATGCTGCTGCTGCCGGGCCCGGTAAAAAAGCAGGCCCCCCTATGATCGCTCAAAAGAAAGTCATTACAGTTAAACCAAAATCCGAAGAAGTGATCATGATAAGCCCCGATTCAAAGGAAGTTGCAAAAGAGAAGAAATGTGAGGACAAGAAAAAGGAAGGAAAAGAAGGAACTTCAAAGAAGAAGAAACCGAGTCATACTCTTAGCTCTGTCCTCACTGCTAGAAGCAAGGCTGCTTGTGGTCTAACTAACAGACCAAAAGATAGGGTTTTCGATATCGATTCAGCCGATTTGGGCAATGAACTGGCTGCAGTTGAATACGTAGAAGACATTTACAAGTTCTACAAGGATTCTGAGCATGAGAGCCAGCCAGAAGACTACCTAGATTCACAACCCGAGCTGAACGTTCAAATGAGGGCAATCCTAGTAGACTGGCTAGTGGACGTTCACAGAAGATTTGAGCTAGCTCCAGAAACATTCTACCTGACCATAAACATCATAGACCGCTTCTTGTCGGTCAAAACCGTGCCTAGACGGGAACTGCAGTTAGTTGGGATCAGCGCCTTGCTCATGGCCTCGAAATATGAAGAAATTTGGGCCCCAGAAGTCAATGACTTTGTCTGTCTGTCTGACCGAGCTTACACTCATGAACAGATCCTTGTCATGGAGAAAACCATCTTAGGCAAGCTAGAATGGACATTAACTGTCCCCACTCCCTATGTCTTCCTCGTTCGGTTTATCAAGGGATCAAATTACAATAAGGGTCAGGAAGTTGATGAAAATTTGGTGTTTTATCTGGCGGAACTAGGTATGATGCATTATGATGCTGCCATTATGTATGGTCCGTCTATGCTAGCTGCAGGGGCTGTGTTTGCAGCTAGATGCACGCTGAGGAAAAGTCCAATTTGGAATGAAACACTAAGGTTTCATACGGGCTTTACGGAAGCTGAGGTCATTGATTGTGCTAAGCTCTTGGTCAGCTTTCATGCGATGGCAGAGAAGAGTAAACTTCAGGTTGTTTACAGGAAGTACTCTAGCTCGGAGAGAGGTGCTGTTGCTTTGCTTCCTCCAGCCAAGACATTATTGCCCGGGGGTGCTGCTGCTGTGTGA 1389 46.58 MTSRPIVPLQARGEAAIGGGNISKPQQKKPAQAEGKNRRALGDIGNVVPARGGVADPTKANRPITRSFCAQLLANAQAAAAAENNKKQVPVNVDAAAAGPGKKAGPPMIAQKKVITVKPKSEEVIMISPDSKEVAKEKKCEDKKKEGKEGTSKKKKPSHTLSSVLTARSKAACGLTNRPKDRVFDIDSADLGNELAAVEYVEDIYKFYKDSEHESQPEDYLDSQPELNVQMRAILVDWLVDVHRRFELAPETFYLTINIIDRFLSVKTVPRRELQLVGISALLMASKYEEIWAPEVNDFVCLSDRAYTHEQILVMEKTILGKLEWTLTVPTPYVFLVRFIKGSNYNKGQEVDENLVFYLAELGMMHYDAAIMYGPSMLAAGAVFAARCTLRKSPIWNETLRFHTGFTEAEVIDCAKLLVSFHAMAEKSKLQVVYRKYSSSERGAVALLPPAKTLLPGGAAAV 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2456728 2458881 + Conep03aG0051500.1 Cone3ag0499 433958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0499 462 Pfam Cyclin, C-terminal domain 330 450 IPR004367 -
Cone3ag0499 462 SMART cyclin_7 334 420 IPR013763 -
Cone3ag0499 462 SMART cyclin_7 237 321 IPR013763 -
Cone3ag0499 462 SUPERFAMILY Cyclin-like 192 327 IPR036915 -
Cone3ag0499 462 FunFam G2/mitotic-specific cyclin 216 328 - -
Cone3ag0499 462 ProSitePatterns Cyclins signature. 232 263 IPR048258 -
Cone3ag0499 462 Gene3D - 217 328 - -
Cone3ag0499 462 Pfam Cyclin, N-terminal domain 203 327 IPR006671 -
Cone3ag0499 462 SUPERFAMILY Cyclin-like 329 453 IPR036915 -
Cone3ag0499 462 CDD CYCLIN_AtCycB-like_rpt1 180 325 - -
Cone3ag0499 462 MobiDBLite consensus disorder prediction 130 156 - -
Cone3ag0499 462 SMART Cyclin_C_2 330 451 IPR004367 -
Cone3ag0499 462 MobiDBLite consensus disorder prediction 130 161 - -
Cone3ag0499 462 Gene3D - 203 446 - -
Cone3ag0499 462 MobiDBLite consensus disorder prediction 1 60 - -
Cone3ag0499 462 PIRSF Cyclin_A_B_D_E 1 461 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone3ag0499 462 PANTHER CYCLINS 181 438 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0499 Cone-Chr3:2456728 Cone5ag1418 Cone-Chr5:8903977 8.43E-115 dispersed
Cone10ag0468 Cone-Chr10:2174874 Cone3ag0499 Cone-Chr3:2456728 1.68E-295 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0499 K21777 - csv:101217210 573.163