Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0500 ATGAAAGAAGACGAGTCGAATTGGTTTTCAAAGTGGGAAGAAGAACTGCCTTCGCCTGAAGAACTCATGCCCATCTCTCAAACCCTAATCACACCTGATCTCGCTCTAGCTTTCGATATCCGAAATCCGAACAACTCCTCTAGCCCACAACACACTCCTCCTCCTCCGACTCTTCTCCCTCCTTCTAACAGCCCTCTCCCCCCTTCCCCCGCCGGTGGTGGCCTTGGTACAGGTCTCTCTTCCGCTGCTGTCGTCGCCACTCCAACCCATCCTAACTCCTCCGACTTCTGCGATTCCGCTGATTTGGGTTCAGGCGCAGCGGGCGACGAGCCTGCTCGCACACTAAAACGGCCCCGCCTTGTGTGGACCCCACAGCTGCACAAACGGTTCGTCGACGCCGTGGCCCACTTAGGGATCAAGAACGCTGTGCCTAAGACGATAATGCAGCTCATGAGCGTAGATGGATTGACTAGAGAGAACGTAGCAAGTCATTTGCAAAAGTACAGACTTTACCTCAAGCGTATGCAAGGATTGTCATCCAGCGGAGGTGGCGGGGGAGCAGGCGGTGGTGCTGGTGGTTTAGTATCTGGGTCTGATCCCGCAACCGACCATCTTTTTGCCAGCTCACCAGTCCCACCTCATTTCTTGCACCCGACCAGGCCGAATTCGGACCATTACTTGCCCTTTGTTCCGGTAGCTGCTCTGCAGCAGCACCACCATCATCACCAGCAGATGGCGGCAGCCGTGGCAGGCCACCACCACCCTCAGATTCAGCCTCAGTATCATCACCAGCATCATAATAGGCAAGTGGGTCATTTCGGGTCCCCTCCAAATGGTCAATTTGATCATCCATTTTTGGCTAGGCAGTCGCAGCAAGTTCATAGAATGGGGGGCCCTCCTATGCATAATTCCGTTCCCAGTTATGTAGAGGATTTTGAATCGGCAAATGCTTCCGGAGGGAGGAGAGTTCTTACCTTGTTTCCAACTGGAGATGACTGA 999 53.85 MKEDESNWFSKWEEELPSPEELMPISQTLITPDLALAFDIRNPNNSSSPQHTPPPPTLLPPSNSPLPPSPAGGGLGTGLSSAAVVATPTHPNSSDFCDSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSSGGGGGAGGGAGGLVSGSDPATDHLFASSPVPPHFLHPTRPNSDHYLPFVPVAALQQHHHHHQQMAAAVAGHHHPQIQPQYHHQHHNRQVGHFGSPPNGQFDHPFLARQSQQVHRMGGPPMHNSVPSYVEDFESANASGGRRVLTLFPTGDD 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2465908 2467772 + Conep03aG0051600.1 Cone3ag0500 433959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0500 332 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 292 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0500 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 173 IPR017930 -
Cone3ag0500 332 NCBIfam myb-like DNA-binding domain, SHAQKYF class 118 170 IPR006447 GO:0003677(InterPro)
Cone3ag0500 332 SUPERFAMILY Homeodomain-like 114 174 IPR009057 -
Cone3ag0500 332 FunFam Two-component response regulator 113 176 - -
Cone3ag0500 332 Gene3D - 114 176 - -
Cone3ag0500 332 MobiDBLite consensus disorder prediction 48 68 - -
Cone3ag0500 332 MobiDBLite consensus disorder prediction 36 111 - -
Cone3ag0500 332 MobiDBLite consensus disorder prediction 1 22 - -
Cone3ag0500 332 MobiDBLite consensus disorder prediction 82 99 - -
Cone3ag0500 332 Pfam Myb-like DNA-binding domain 120 169 IPR001005 -
Cone3ag0500 332 MobiDBLite consensus disorder prediction 1 18 - -
Cone3ag0500 332 MobiDBLite consensus disorder prediction 263 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0500 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0620 Cone-Chr1:6042713 Cone3ag0500 Cone-Chr3:2465908 6.27E-40 dispersed
Cone3ag0500 Cone-Chr3:2465908 Cone5ag1126 Cone-Chr5:5011016 6.48E-44 dispersed
Cone10ag0471 Cone-Chr10:2186437 Cone3ag0500 Cone-Chr3:2465908 1.78E-193 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g486 . . . Bda09g01515 . . . . Cmo13g00108 . Cma01g00619 Cma13g00110 Car01g00563 Car13g00081 Sed14g0045 . Cpe20g00834 Bhi08g00576 Tan01g2411 Cmetu12g0038 . Hepe10g1262 . Lcy11g0162 Cla02g01948 Cam02g2065 Cec02g2102 Cco02g2133 Clacu02g2052 Cmu02g1993 Cre02g2302 Cone3ag0500 Cone10ag0471 . . Lsi02g01341 Csa06g01467 Chy11g01210 Cme11g01332 Blo13g01068 . . . Bpe08g00093 . Bma07g00088 . Sed01g0847 Cmo02g00786 Cmo20g00418 Cma02g00786 . Car02g00565 Car20g00334 . . Bhi10g00739 Tan05g0421 Cmetu11g1564 . Hepe10g1262 . . Cla03g00126 Cam03g0128 Cec03g0127 Cco03g0134 Clacu03g0131 Cmu03g0752 Cre03g0444 . Csa01g02442 Chy12g00223 Cme12g00152
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone18ag1238 . 270 476 G2-like Transcription Factor Family AT5G16560 57.8 1.4e-47 188.0
Cone12ag0486 . 157 360 G2-like Transcription Factor Family AT5G16560 50.7 2.9e-37 153.7
Cone7ag1407 . 4 183 G2-like Transcription Factor Family AT5G42630 57.0 6.7e-44 174.9
Cone4ag1544 . 2 177 G2-like Transcription Factor Family AT5G42630 58.8 3.4e-40 162.5
Cone20ag0163 . 112 263 G2-like Transcription Factor Family AT5G42630 60.5 7.9e-37 151.4
Cone1ag0620 . 1 325 G2-like Transcription Factor Family AT5G59570 50.3 8.6e-63 238.0
Cone19ag0853 . 1 273 G2-like Transcription Factor Family AT1G25550 58.2 6.1e-63 238.4
Cone13ag0852 . 20 275 G2-like Transcription Factor Family AT1G25550 57.7 2.3e-62 236.5
Cone9ag0476 . 12 255 G2-like Transcription Factor Family AT1G25550 56.9 4.1e-59 225.7
Cone6ag0464 . 12 255 G2-like Transcription Factor Family AT1G25550 56.6 7.0e-59 224.9
Cone13ag0852 . 20 315 G2-like Transcription Factor Family AT1G68670 51.3 1.8e-67 253.8
Cone19ag0853 . 19 306 G2-like Transcription Factor Family AT1G68670 53.3 5.2e-67 252.3
Cone6ag0464 . 12 292 G2-like Transcription Factor Family AT1G68670 52.1 3.5e-63 239.6
Cone5ag1126 . 1 263 G2-like Transcription Factor Family AT3G46640 54.6 1.0e-64 244.6
Cone1ag0620 . 1 285 G2-like Transcription Factor Family AT3G46640 52.1 1.4e-63 240.7
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT5G05090 51.9 4.8e-73 271.9
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT5G05090 51.5 3.4e-71 265.8
Cone4ag0401 . 1 291 G2-like Transcription Factor Family AT4G13640 58.7 2.5e-62 236.5
Cone7ag0390 . 1 291 G2-like Transcription Factor Family AT4G13640 58.5 1.4e-60 230.7
Cone10ag0633 . 88 350 G2-like Transcription Factor Family AT3G04450 54.4 6.8e-55 212.2
Cone17ag0682 . 83 296 G2-like Transcription Factor Family AT3G04450 55.5 8.4e-45 178.7
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone6ag0578 . 5 267 G2-like Transcription Factor Family AT1G69580 53.5 3.8e-51 199.5
Cone9ag0583 . 5 257 G2-like Transcription Factor Family AT1G69580 52.0 3.6e-49 193.0
Cone10ag0559 . 54 247 G2-like Transcription Factor Family AT1G69580 55.6 4.1e-37 152.9
Cone8ag1607 . 1 301 G2-like Transcription Factor Family AT1G79430 57.0 5.1e-70 262.3
Cone3ag1514 . 1 322 G2-like Transcription Factor Family AT1G79430 51.6 2.8e-68 256.5
Cone10ag1448 . 1 326 G2-like Transcription Factor Family AT1G79430 51.5 3.1e-67 253.1
Cone4ag0401 . 34 197 G2-like Transcription Factor Family AT1G79430 62.2 1.5e-40 164.5
Cone7ag0390 . 19 225 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-39 160.6
Cone1ag0088 . 80 297 G2-like Transcription Factor Family AT2G01060 70.2 2.1e-59 226.5
Cone5ag1779 . 80 301 G2-like Transcription Factor Family AT2G01060 68.9 7.8e-59 224.6
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT3G10760 60.9 5.3e-93 338.6
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT3G10760 59.4 9.9e-92 334.3
Cone10ag0471 . 1 220 G2-like Transcription Factor Family AT2G40970 59.9 3.0e-61 232.6
Cone3ag0500 . 1 218 G2-like Transcription Factor Family AT2G40970 60.0 1.5e-60 230.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45794 PF14360 PAP2_C 4.10E-22 CL0525 Cone TF