Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0500 ATGAAAGAAGACGAGTCGAATTGGTTTTCAAAGTGGGAAGAAGAACTGCCTTCGCCTGAAGAACTCATGCCCATCTCTCAAACCCTAATCACACCTGATCTCGCTCTAGCTTTCGATATCCGAAATCCGAACAACTCCTCTAGCCCACAACACACTCCTCCTCCTCCGACTCTTCTCCCTCCTTCTAACAGCCCTCTCCCCCCTTCCCCCGCCGGTGGTGGCCTTGGTACAGGTCTCTCTTCCGCTGCTGTCGTCGCCACTCCAACCCATCCTAACTCCTCCGACTTCTGCGATTCCGCTGATTTGGGTTCAGGCGCAGCGGGCGACGAGCCTGCTCGCACACTAAAACGGCCCCGCCTTGTGTGGACCCCACAGCTGCACAAACGGTTCGTCGACGCCGTGGCCCACTTAGGGATCAAGAACGCTGTGCCTAAGACGATAATGCAGCTCATGAGCGTAGATGGATTGACTAGAGAGAACGTAGCAAGTCATTTGCAAAAGTACAGACTTTACCTCAAGCGTATGCAAGGATTGTCATCCAGCGGAGGTGGCGGGGGAGCAGGCGGTGGTGCTGGTGGTTTAGTATCTGGGTCTGATCCCGCAACCGACCATCTTTTTGCCAGCTCACCAGTCCCACCTCATTTCTTGCACCCGACCAGGCCGAATTCGGACCATTACTTGCCCTTTGTTCCGGTAGCTGCTCTGCAGCAGCACCACCATCATCACCAGCAGATGGCGGCAGCCGTGGCAGGCCACCACCACCCTCAGATTCAGCCTCAGTATCATCACCAGCATCATAATAGGCAAGTGGGTCATTTCGGGTCCCCTCCAAATGGTCAATTTGATCATCCATTTTTGGCTAGGCAGTCGCAGCAAGTTCATAGAATGGGGGGCCCTCCTATGCATAATTCCGTTCCCAGTTATGTAGAGGATTTTGAATCGGCAAATGCTTCCGGAGGGAGGAGAGTTCTTACCTTGTTTCCAACTGGAGATGACTGA 999 53.85 MKEDESNWFSKWEEELPSPEELMPISQTLITPDLALAFDIRNPNNSSSPQHTPPPPTLLPPSNSPLPPSPAGGGLGTGLSSAAVVATPTHPNSSDFCDSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSSGGGGGAGGGAGGLVSGSDPATDHLFASSPVPPHFLHPTRPNSDHYLPFVPVAALQQHHHHHQQMAAAVAGHHHPQIQPQYHHQHHNRQVGHFGSPPNGQFDHPFLARQSQQVHRMGGPPMHNSVPSYVEDFESANASGGRRVLTLFPTGDD 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2465908 2467772 + Conep03aG0051600.1 Cone3ag0500 433959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0500 332 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 292 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0500 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 173 IPR017930 -
Cone3ag0500 332 NCBIfam myb-like DNA-binding domain, SHAQKYF class 118 170 IPR006447 GO:0003677(InterPro)
Cone3ag0500 332 SUPERFAMILY Homeodomain-like 114 174 IPR009057 -
Cone3ag0500 332 FunFam Two-component response regulator 113 176 - -
Cone3ag0500 332 Gene3D - 114 176 - -
Cone3ag0500 332 MobiDBLite consensus disorder prediction 48 68 - -
Cone3ag0500 332 MobiDBLite consensus disorder prediction 36 111 - -
Cone3ag0500 332 MobiDBLite consensus disorder prediction 1 22 - -
Cone3ag0500 332 MobiDBLite consensus disorder prediction 82 99 - -
Cone3ag0500 332 Pfam Myb-like DNA-binding domain 120 169 IPR001005 -
Cone3ag0500 332 MobiDBLite consensus disorder prediction 1 18 - -
Cone3ag0500 332 MobiDBLite consensus disorder prediction 263 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0620 Cone-Chr1:6042713 Cone3ag0500 Cone-Chr3:2465908 6.27E-40 dispersed
Cone3ag0500 Cone-Chr3:2465908 Cone5ag1126 Cone-Chr5:5011016 6.48E-44 dispersed
Cone10ag0471 Cone-Chr10:2186437 Cone3ag0500 Cone-Chr3:2465908 1.78E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45794 PF14360 PAP2_C 4.10E-22 CL0525 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0500 - - - 0.0