Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0519 ATGGATTTCTTACAGACGGTCGATCCTCAGATTCTTCTGGGTTTGGCTGTCGCCGTTGTAGCCATTGGTGTTGCTGCTGCTTTTCTCTTCTCTTCTTCTAACAAGTCCAAGACCAGAGGCTGCTTAGATCCAGATAATTACAGGGAGTTTAAACTTGTCGAGCGCTTGCAGTTGAGCCATAATGTAGCCAAGTTCACTTTTGCACTTCCTACACCCACATCAGTTCTTGGTCTTCCCATTGGACAGCATATGAGTTGCAGGGGCAAGGATAATTTAGGAGAAGAGGTTATTAAACCATATACTCCTACGACTTTGGACTCTGATGTAGGGATTTTTGAATTAGTCATAAAGATGTATCCTCAAGGAAGAATGTCGCATCATTTCAGAGAGCTGCGTGTTGGGGATTATCTTGCTGTGAAGGGGCCTAAGGGGCGTTTCAAGTATCAACTTGGTCAAGTTAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGAATCACTCCTATGTTTCAAGTTGCTCGAGCCATATTGGAAAACCCAATCGACAAAACAAAGGTGCACCTTATTTATGCTAATGTTGCATTTGAGGACATCCTCTTAAAGGAGGAGTTAGACTCTCTTGCTGCGAAATACCCAGATCGCTTCAAGATCTACTATGTCTTGAACAATCCTCCTGAAGTTTGGGATGGTGGGATCGGCTTTGTATCTGCAGACATGATTAAAACCCACTGCCCTGCCCCAGCTTCTGACATTCAGATTCTAAGGTGTGGGCCCCCACCTATGAACAAGGCCATGGCTGCTCATCTTGAGGCTCTAGGATACACACCCGAGATGCAGTTCCAATTCTGA 846 45.39 MDFLQTVDPQILLGLAVAVVAIGVAAAFLFSSSNKSKTRGCLDPDNYREFKLVERLQLSHNVAKFTFALPTPTSVLGLPIGQHMSCRGKDNLGEEVIKPYTPTTLDSDVGIFELVIKMYPQGRMSHHFRELRVGDYLAVKGPKGRFKYQLGQVRAFGMLAGGSGITPMFQVARAILENPIDKTKVHLIYANVAFEDILLKEELDSLAAKYPDRFKIYYVLNNPPEVWDGGIGFVSADMIKTHCPAPASDIQILRCGPPPMNKAMAAHLEALGYTPEMQFQF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2561974 2564741 + Conep03aG0053500.1 Cone3ag0519 433978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0519 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Cone3ag0519 281 Gene3D Translation factors 40 139 - -
Cone3ag0519 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Cone3ag0519 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Cone3ag0519 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Cone3ag0519 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Cone3ag0519 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Cone3ag0519 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Cone3ag0519 281 Gene3D - 140 281 IPR039261 -
Cone3ag0519 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
Cone3ag0519 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491(InterPro)
Cone3ag0519 281 SUPERFAMILY Riboflavin synthase domain-like 42 148 IPR017938 -
Cone3ag0519 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
Cone3ag0519 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 277 IPR039261 -
Cone3ag0519 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Cone3ag0519 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cone3ag0519 281 CDD cyt_b5_reduct_like 50 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0519 K00326 - - rcu:8268574 473.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0382 Cone-Chr1:3268924 Cone3ag0519 Cone-Chr3:2561974 3.58E-155 dispersed
Cone3ag0519 Cone-Chr3:2561974 Cone5ag1478 Cone-Chr5:9871340 2.67E-157 dispersed
Cone10ag0494 Cone-Chr10:2284887 Cone3ag0519 Cone-Chr3:2561974 9.84E-195 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g373 . . . . . . . . . . Cma03g00301 Cma07g01229 Car03g00263 Car07g01184 Sed03g2446 Cpe10g00994 . Bhi03g02209 Tan03g0724 Cmetu08g0545 . Hepe04g0693 . . Cla04g00655 Cam04g0653 Cec04g0774 Cco04g0825 Clacu04g0700 Cmu04g0695 Cre04g0747 Cone3ag0519 . . . Lsi01g01605 . . . . . . . . . . . . Cmo03g00314 Cmo07g01271 . . . . . Cpe19g00147 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1008 . 1 134 NADPH P450 reductases AT5G53560 73.1 1.1e-54 209.9
Cone5ag0716 . 1 168 NADPH P450 reductases AT5G53560 58.3 2.4e-49 192.2
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.1e-46 183.3
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.9e-46 182.6
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G53560 56.7 1.4e-41 166.4
Cone15ag0479 . 1 133 NADPH P450 reductases AT5G53560 52.2 1.6e-37 152.9
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G48810 65.2 7.4e-49 190.7
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G48810 65.2 1.3e-48 189.9
Cone1ag1008 . 1 135 NADPH P450 reductases AT5G48810 62.0 5.0e-45 177.9
Cone18ag0994 . 1 135 NADPH P450 reductases AT5G48810 55.9 6.3e-40 161.0
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G48810 53.7 2.4e-39 159.1
Cone7ag0386 . 22 133 NADPH P450 reductases AT2G32720 80.4 1.6e-48 189.5
Cone4ag0397 . 22 133 NADPH P450 reductases AT2G32720 79.5 4.6e-48 188.0
Cone1ag1008 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.8e-37 152.1
Cone4ag0958 . 1 117 NADPH P450 reductases AT1G60660 60.0 4.3e-37 151.4
Cone9ag0531 . 1 130 NADPH P450 reductases AT1G26340 59.7 5.5e-41 164.5
Cone3ag0519 . 2 281 NADPH P450 reductases AT5G17770 80.4 9.1e-131 463.8
Cone10ag0494 . 3 281 NADPH P450 reductases AT5G17770 81.0 2.2e-129 459.1
Cone5ag1478 . 8 278 NADPH P450 reductases AT5G17770 76.4 8.2e-124 440.7
Cone1ag0382 . 8 278 NADPH P450 reductases AT5G17770 77.1 5.3e-123 438.0
Cone1ag1008 . 1 134 NADPH P450 reductases AT5G53560 73.1 1.1e-54 209.9
Cone5ag0716 . 1 168 NADPH P450 reductases AT5G53560 58.3 2.4e-49 192.2
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.1e-46 183.3
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.9e-46 182.6
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G53560 56.7 1.4e-41 166.4
Cone15ag0479 . 1 133 NADPH P450 reductases AT5G53560 52.2 1.6e-37 152.9
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G48810 65.2 7.4e-49 190.7
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G48810 65.2 1.3e-48 189.9
Cone1ag1008 . 1 135 NADPH P450 reductases AT5G48810 62.0 5.0e-45 177.9
Cone18ag0994 . 1 135 NADPH P450 reductases AT5G48810 55.9 6.3e-40 161.0
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G48810 53.7 2.4e-39 159.1
Cone7ag0386 . 22 133 NADPH P450 reductases AT2G32720 80.4 1.6e-48 189.5
Cone4ag0397 . 22 133 NADPH P450 reductases AT2G32720 79.5 4.6e-48 188.0
Cone1ag1008 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.8e-37 152.1
Cone4ag0958 . 1 117 NADPH P450 reductases AT1G60660 60.0 4.3e-37 151.4
Cone9ag0531 . 1 130 NADPH P450 reductases AT1G26340 59.7 5.5e-41 164.5
Cone3ag0519 . 2 281 NADPH P450 reductases AT5G17770 80.4 9.1e-131 463.8
Cone10ag0494 . 3 281 NADPH P450 reductases AT5G17770 81.0 2.2e-129 459.1
Cone5ag1478 . 8 278 NADPH P450 reductases AT5G17770 76.4 8.2e-124 440.7
Cone1ag0382 . 8 278 NADPH P450 reductases AT5G17770 77.1 5.3e-123 438.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86