Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0535 ATGTGCATCGTTTTAGACCTCTCTCCACTCTGTTTCCTTTTCCCGCCACTTTCATCGTCTCTCTCGATCCATATTTTCTCTTTGTGTAGACGGCGATTGCAGCTTGTTAATCGGGAGAAGATGTTGTGGGTGGACAAGTACCGTCCCAAAACCCTAGATCAGATTCAGGTCCATGAAGACATCGCCAGCAACCTCAAAAAATTGGTTAGTGAGCAGGACTGCCCCCATTTGCTCTTCTATGGCCCGCCTGGTTCCGGCAAGAAAACCCTAATTATGGCCCTTCTCCGACAGATGTTCGGACCTAGTGCTGAGAAGGTGAAGGTAGAGGATAAGACATGGAAAGTTGATGCAGGAAGTAGAACACTTGATATAGAGTTAACCACATTATCAAGCACCCATCACGTAGAACTGAGCCCTGGGGATGCTGGATTTCAGGATAGATATGTTGTTCAAGAGATAATCAAAGAGATGGCAAAGAATCGACCAATTGATACGAAAGGGAAAAAAGGATATAAAGTACTAGTTCTAAATGAGGTCGACAAACTATCAAGAGAAGCTCAGCACTCGCTTAGGAGAACAATGGAGAAATACAGCTCATATTGTAGGCTGATACTTTGCTGCAATAGTTCTTCAAAAGTTACTGAAGCTATCCGTTCTCGCTGTCTGAATGTACGCATAAATGCACCGACTGAGGAACAGATTGTTAAGGTAATAGATTTCATCGGAAAGAAAGAAGGGCTGCAAATTCCACCTGGATTTGCTGCTCGTATTGCGGAAAAATCAAATCGAAGTTTAAGGAGAGCTATACTGTCATTTGAGACTTGCCGCGTACAACAGTATCCTTTTGTTAGTAACCAAGCAATATCACCAATGGATTGGGAGGAATACGTCTCTGAGATAGCATCTGACATAATGAAAGAGCAGAGCCCGAAAAGGCTGTTTCAAGTTCGTGGGAAGTTGTATGAGCTGCTAATTAATTGTATTCCTCCAGAGATAATATTAAAGAGAATGCTTTATGAACTATTGAAGAAACTGGATGCCGAATTAAAGCATGAGGTTTGCCATTGGGCTGCATATTATGAACACAGGATGCGTCTTGGACAGAAAGCCATTTTCCATCTTGAAGCTTTCGTGGCCAAGTTCATGAGCATATACAAGTCTTTCTTGATTTCTACATTCGGTTGA 1185 42.45 MCIVLDLSPLCFLFPPLSSSLSIHIFSLCRRRLQLVNREKMLWVDKYRPKTLDQIQVHEDIASNLKKLVSEQDCPHLLFYGPPGSGKKTLIMALLRQMFGPSAEKVKVEDKTWKVDAGSRTLDIELTTLSSTHHVELSPGDAGFQDRYVVQEIIKEMAKNRPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSKVTEAIRSRCLNVRINAPTEEQIVKVIDFIGKKEGLQIPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFVSNQAISPMDWEEYVSEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRMLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKSFLISTFG 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2644625 2647438 - Conep03aG0055100.1 Cone3ag0535 433994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0535 394 CDD HLD_clamp_RFC 229 297 IPR047854 -
Cone3ag0535 394 Gene3D - 40 229 IPR027417 -
Cone3ag0535 394 Gene3D - 230 289 - -
Cone3ag0535 394 FunFam Replication factor C subunit 5 40 229 - -
Cone3ag0535 394 Gene3D - 292 385 - -
Cone3ag0535 394 SMART AAA_5 73 232 IPR003593 GO:0016887(InterPro)
Cone3ag0535 394 Pfam DNA polymerase III, delta subunit 58 228 - -
Cone3ag0535 394 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 43 386 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cone3ag0535 394 CDD AAA 59 229 - -
Cone3ag0535 394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 279 IPR027417 -
Cone3ag0535 394 Pfam RCF1/5-like, AAA+ ATPase lid domain 237 276 - -
Cone3ag0535 394 Pfam Replication factor C subunit 3, C-terminal domain 293 382 - -
Cone3ag0535 394 FunFam replication factor C subunit 3 230 288 - -
Cone3ag0535 394 FunFam Replication factor C subunit 3 292 385 - -
Cone3ag0535 394 SUPERFAMILY post-AAA+ oligomerization domain-like 291 386 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0535 Cone-Chr3:2644625 Cone4ag1422 Cone-Chr4:11344487 3.30E-30 dispersed
Cone15ag0301 Cone-Chr15:1406415 Cone3ag0535 Cone-Chr3:2644625 1.02E-40 transposed
Cone10ag0510 Cone-Chr10:2339948 Cone3ag0535 Cone-Chr3:2644625 2.32E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0535 K10756 - vvi:100247946 657.521