Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0542 ATGGTTAATGCTCCATGTGGGGCGTGCAAATTCTTGAGAAGGAAGTGCGTAAGTGGGTGCATATTTTCACCTCACTTTGGGTCCGACCAAGGTGCGGCTAGGTTCGCTGCGGTGCATAAGGTGTTCGGTGCGAGTAATGTATCGAAGCTCTTGTTGCATATACCTGTGAACCGGAGACCTGTTGCTGTGGTGACCATATCTTATGAGGCTCAGGCAAGATTGTCTGACCCGGTTTATGGTTGCGTCTCTACCATACTCGCTTTACAGCAACAGGTGGCAACCTTGCAAGCTGAGCTAGCGGTGGTGCAAACGCAACTTATGAACAGTAGAATGGCGTTTACAAATGCAATAAAGAGCTCACAACAAGATCATCATCAAGAACACCAAATGGCAGGAATGTTGGGTCAACAGATATTACCGGCGTACTCCAATAACTCCTCCGCCTCGAATAATCTAATCAATATCTCTGCCGTCACCACCACCACCACCACCAACACTACTGCCTTCCCTGCCGCAAACAATTTCAACCTTGCACCAGGTAAAACCACAGCACCACTATCCTCAGGCCAGAGCTATGAGCCACTTTACCTTAGTTCACATCCTTCGCTCCGTGAAGATCAGGAACAAGAAGATGATGAACAAGAGAGTAGTCACGTTCCTACGCCTGCTTGCATGTTCAATAATCATGATTTACTTCACTCTAGGTAA 708 47.46 MVNAPCGACKFLRRKCVSGCIFSPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRPVAVVTISYEAQARLSDPVYGCVSTILALQQQVATLQAELAVVQTQLMNSRMAFTNAIKSSQQDHHQEHQMAGMLGQQILPAYSNNSSASNNLINISAVTTTTTTNTTAFPAANNFNLAPGKTTAPLSSGQSYEPLYLSSHPSLREDQEQEDDEQESSHVPTPACMFNNHDLLHSR 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2684662 2685446 + Conep03aG0055800.1 Cone3ag0542 434001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0542 235 Coils Coil 85 105 - -
Cone3ag0542 235 Pfam Lateral organ boundaries (LOB) domain 5 103 IPR004883 -
Cone3ag0542 235 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 187 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cone3ag0542 235 MobiDBLite consensus disorder prediction 174 235 - -
Cone3ag0542 235 ProSiteProfiles LOB domain profile. 4 106 IPR004883 -
Cone3ag0542 235 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0542 Cone-Chr3:2684662 Cone7ag1008 Cone-Chr7:7775944 1.41E-45 dispersed
Cone3ag0542 Cone-Chr3:2684662 Cone4ag1122 Cone-Chr4:9698498 1.06E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45801 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0542 - - - 0.0