Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone3ag0557 | ATGACAAGGTTATTGCAGGGTTCGTATGAGATCCAAAGGGGTCAAAGTTCTCGAGAAGGGGACATTGAGTTAGGGACGAATGCCGCCATGAATTCTGGAGAGCTTGGTTTGGAAAGTTTTCTGAAACAGGTCGAACAGATTGACAAACAAAATGAGAAACTGGATAAGCTACTCCGAAAACTCCAGGACACGCATAAAGAATCCATTGGTGTGACGAAGGCTCCTCCTATGAAAGCAATCAAGCAGCGAATGGAAAAAGATGTCGATGAAGTAGGAAGAGTTGCTCGTTTTGTGAAGTCAAAGATTGAAGAACTTGATAGAGAGAATTTAGCAAACAGACAGAAGCCAGGGTGCGGAAAAGGAACAGGTGTAGATAGATCCAGAACGGCAACTACTCTTGCATTGAAAAAGAAGTTTAAGGACAAGATGACTCAATTCCAGACTCTAAGGCAAGCCATCCATCAAGATTATCGAGAAGTTGTTGAGCGACGTGTCTTTACGGTTACGGGTGAAAGAGCCGATGAAGAGACAATTGACAAGTTGATTGAGACTGGAGAGTGTAAACAAATTTTTCAAAAGGCGATACAGGAACAAGGGCGAGGGCAGATAGTGGACGCACTAGCAGAAATTCATGAACGTCACGGCGCAGTTGTAGAACTGGAGAAAAAGCTTCTTGGACTACAGCAGGTATTTCTGGATTTGGCCGTCTTGGTGGATGCACAAGGGGATATGCTCGACAATATAGAATCACATGTTTCAGGTGCAGTGGATCATGTGCAACACGGAAACAATGCTCTCCAAAAGGCCAAGAAACTACAGAAGGGTACAAGGAAATGGATGTTCATTGGCATTCTCATTCTTCTTGCCGTCGCTGCAATCATAGTTCTAGGCGTTCTTAAGCCATGGCAGAGTCGTGCTCCTCGTGGACCTCGTGGTGATGAAGTCCCTCCCCAATTTCGTGGATAA | 966 | 44.82 | MTRLLQGSYEIQRGQSSREGDIELGTNAAMNSGELGLESFLKQVEQIDKQNEKLDKLLRKLQDTHKESIGVTKAPPMKAIKQRMEKDVDEVGRVARFVKSKIEELDRENLANRQKPGCGKGTGVDRSRTATTLALKKKFKDKMTQFQTLRQAIHQDYREVVERRVFTVTGERADEETIDKLIETGECKQIFQKAIQEQGRGQIVDALAEIHERHGAVVELEKKLLGLQQVFLDLAVLVDAQGDMLDNIESHVSGAVDHVQHGNNALQKAKKLQKGTRKWMFIGILILLAVAAIIVLGVLKPWQSRAPRGPRGDEVPPQFRG | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2748964 | 2751607 | + | Conep03aG0057500.1 | Cone3ag0557 | 434016 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone3ag0557 | 321 | CDD | SNARE_syntaxin1-like | 206 | 268 | - | - | |
Cone3ag0557 | 321 | Gene3D | - | 35 | 161 | - | - | |
Cone3ag0557 | 321 | CDD | SynN | 37 | 194 | IPR006011 | GO:0016020(InterPro) | |
Cone3ag0557 | 321 | FunFam | Syntaxin 132 | 32 | 161 | - | - | |
Cone3ag0557 | 321 | FunFam | Syntaxin 132 | 200 | 300 | - | - | |
Cone3ag0557 | 321 | SUPERFAMILY | t-snare proteins | 36 | 262 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cone3ag0557 | 321 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 207 | 269 | IPR000727 | - | |
Cone3ag0557 | 321 | Gene3D | - | 196 | 300 | - | - | |
Cone3ag0557 | 321 | SMART | tSNARE_6 | 202 | 269 | IPR000727 | - | |
Cone3ag0557 | 321 | SMART | SynN_4 | 32 | 158 | IPR006011 | GO:0016020(InterPro) | |
Cone3ag0557 | 321 | Coils | Coil | 37 | 67 | - | - | |
Cone3ag0557 | 321 | PANTHER | SYNTAXIN | 39 | 286 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cone3ag0557 | 321 | Pfam | Syntaxin | 39 | 242 | IPR006011 | GO:0016020(InterPro) | |
Cone3ag0557 | 321 | Pfam | SNARE domain | 243 | 295 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag0131 | Cone-Chr1:738960 | Cone3ag0557 | Cone-Chr3:2748964 | 1.44E-70 | dispersed | |
Cone3ag0557 | Cone-Chr3:2748964 | Cone3ag1346 | Cone-Chr3:32432230 | 9.13E-105 | dispersed | |
Cone13ag0457 | Cone-Chr13:4925873 | Cone3ag0557 | Cone-Chr3:2748964 | 5.45E-155 | transposed | |
Cone10ag0529 | Cone-Chr10:2441741 | Cone3ag0557 | Cone-Chr3:2748964 | 1.96E-192 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone3ag0557 | K08486 | - | mdm:103413446 | 440.269 |