Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0557 ATGACAAGGTTATTGCAGGGTTCGTATGAGATCCAAAGGGGTCAAAGTTCTCGAGAAGGGGACATTGAGTTAGGGACGAATGCCGCCATGAATTCTGGAGAGCTTGGTTTGGAAAGTTTTCTGAAACAGGTCGAACAGATTGACAAACAAAATGAGAAACTGGATAAGCTACTCCGAAAACTCCAGGACACGCATAAAGAATCCATTGGTGTGACGAAGGCTCCTCCTATGAAAGCAATCAAGCAGCGAATGGAAAAAGATGTCGATGAAGTAGGAAGAGTTGCTCGTTTTGTGAAGTCAAAGATTGAAGAACTTGATAGAGAGAATTTAGCAAACAGACAGAAGCCAGGGTGCGGAAAAGGAACAGGTGTAGATAGATCCAGAACGGCAACTACTCTTGCATTGAAAAAGAAGTTTAAGGACAAGATGACTCAATTCCAGACTCTAAGGCAAGCCATCCATCAAGATTATCGAGAAGTTGTTGAGCGACGTGTCTTTACGGTTACGGGTGAAAGAGCCGATGAAGAGACAATTGACAAGTTGATTGAGACTGGAGAGTGTAAACAAATTTTTCAAAAGGCGATACAGGAACAAGGGCGAGGGCAGATAGTGGACGCACTAGCAGAAATTCATGAACGTCACGGCGCAGTTGTAGAACTGGAGAAAAAGCTTCTTGGACTACAGCAGGTATTTCTGGATTTGGCCGTCTTGGTGGATGCACAAGGGGATATGCTCGACAATATAGAATCACATGTTTCAGGTGCAGTGGATCATGTGCAACACGGAAACAATGCTCTCCAAAAGGCCAAGAAACTACAGAAGGGTACAAGGAAATGGATGTTCATTGGCATTCTCATTCTTCTTGCCGTCGCTGCAATCATAGTTCTAGGCGTTCTTAAGCCATGGCAGAGTCGTGCTCCTCGTGGACCTCGTGGTGATGAAGTCCCTCCCCAATTTCGTGGATAA 966 44.82 MTRLLQGSYEIQRGQSSREGDIELGTNAAMNSGELGLESFLKQVEQIDKQNEKLDKLLRKLQDTHKESIGVTKAPPMKAIKQRMEKDVDEVGRVARFVKSKIEELDRENLANRQKPGCGKGTGVDRSRTATTLALKKKFKDKMTQFQTLRQAIHQDYREVVERRVFTVTGERADEETIDKLIETGECKQIFQKAIQEQGRGQIVDALAEIHERHGAVVELEKKLLGLQQVFLDLAVLVDAQGDMLDNIESHVSGAVDHVQHGNNALQKAKKLQKGTRKWMFIGILILLAVAAIIVLGVLKPWQSRAPRGPRGDEVPPQFRG 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2748964 2751607 + Conep03aG0057500.1 Cone3ag0557 434016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0557 321 CDD SNARE_syntaxin1-like 206 268 - -
Cone3ag0557 321 Gene3D - 35 161 - -
Cone3ag0557 321 CDD SynN 37 194 IPR006011 GO:0016020(InterPro)
Cone3ag0557 321 FunFam Syntaxin 132 32 161 - -
Cone3ag0557 321 FunFam Syntaxin 132 200 300 - -
Cone3ag0557 321 SUPERFAMILY t-snare proteins 36 262 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone3ag0557 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Cone3ag0557 321 Gene3D - 196 300 - -
Cone3ag0557 321 SMART tSNARE_6 202 269 IPR000727 -
Cone3ag0557 321 SMART SynN_4 32 158 IPR006011 GO:0016020(InterPro)
Cone3ag0557 321 Coils Coil 37 67 - -
Cone3ag0557 321 PANTHER SYNTAXIN 39 286 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone3ag0557 321 Pfam Syntaxin 39 242 IPR006011 GO:0016020(InterPro)
Cone3ag0557 321 Pfam SNARE domain 243 295 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0131 Cone-Chr1:738960 Cone3ag0557 Cone-Chr3:2748964 1.44E-70 dispersed
Cone3ag0557 Cone-Chr3:2748964 Cone3ag1346 Cone-Chr3:32432230 9.13E-105 dispersed
Cone13ag0457 Cone-Chr13:4925873 Cone3ag0557 Cone-Chr3:2748964 5.45E-155 transposed
Cone10ag0529 Cone-Chr10:2441741 Cone3ag0557 Cone-Chr3:2748964 1.96E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0557 K08486 - mdm:103413446 440.269