Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone3ag0576 | ATGAACGACCTAATGACCAAATCCTTCACTAACTACGTAGATCTAAAGAAGGCAGCCATGAAAGACCTAGATCTCGAATCTGGCAACCTAGAGATGTCATCAGCAACAATACATATGGACAACGATCTTAACCAATTCCTAGCAGAGGCTGAGAGGGTCAAAACCGAAATGGACTGCATCAAATCCCTCCTCCTCAATCTCCAACAAGCAAACGAAGAGAGCAAATACCTACACAAACCCGAACCCCTGAAAGCCCTGCGCGAAAAAATCAATTCTGACATCCTCACTGTCCTGAAAAACGCACGGGCCATCCAAACTCACCTCGAAGAGATGGACCGTGCCAATGCGACCTACAAACGACTCTCGGGCCAGAAACAGAACGACAAAAGCTTCACGCCGATTTACCGGGCCCGGATCGGGGTCACGAATGGGTTGAGAAAGCGACTCAAGGAGCTCATGATGGAATTTCAAACTCTCCGACAGAAGATGATGACAGAGTACAAGGAAACAGTCGGCAGGAGATACTTTACGGTGACAGGGGAGTATCCGGGGGAAGAGGCGATAGAGAAGATCATATCGGAGGGAGGGGAGGAGTATATGGGCCAGGCCATCAAACAACATGGGAGGGGTAAGGTGGTTGAGATGGTTGTGGAGATTAAGGACAGGTACGACGGGGCAAAGGAAGTGGAGAAGAGTCTGTTGGAACTGCATAGGCTGTTTATGGACATGGCGGTTATGGTGGAGGCGCAAGGGGAGAAGATGGATGATATCGAACACCATGTTTTGAGTGCTGGGCAGTATGTTAGTGATGGGACTAAGAGTTTGAAGACTGCGAAGGAGTATCAGAGGAGTAGTAGGAAGTGTATGTGTTTGGGAATTATTCTTCTGCTTGTGATTGTCCTTGCTATTGTCATAGGTGTGACCACTTCTTGA | 933 | 48.23 | MNDLMTKSFTNYVDLKKAAMKDLDLESGNLEMSSATIHMDNDLNQFLAEAERVKTEMDCIKSLLLNLQQANEESKYLHKPEPLKALREKINSDILTVLKNARAIQTHLEEMDRANATYKRLSGQKQNDKSFTPIYRARIGVTNGLRKRLKELMMEFQTLRQKMMTEYKETVGRRYFTVTGEYPGEEAIEKIISEGGEEYMGQAIKQHGRGKVVEMVVEIKDRYDGAKEVEKSLLELHRLFMDMAVMVEAQGEKMDDIEHHVLSAGQYVSDGTKSLKTAKEYQRSSRKCMCLGIILLLVIVLAIVIGVTTS | 310 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2843996 | 2844949 | - | Conep03aG0059400.1 | Cone3ag0576 | 434035 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone3ag0576 | 310 | Gene3D | - | 38 | 171 | - | - | |
Cone3ag0576 | 310 | SUPERFAMILY | t-snare proteins | 40 | 271 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cone3ag0576 | 310 | CDD | SNARE_syntaxin1-like | 216 | 277 | - | - | |
Cone3ag0576 | 310 | ProSitePatterns | Syntaxin / epimorphin family signature. | 222 | 262 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cone3ag0576 | 310 | Gene3D | - | 212 | 309 | - | - | |
Cone3ag0576 | 310 | CDD | SynN | 46 | 198 | IPR006011 | GO:0016020(InterPro) | |
Cone3ag0576 | 310 | SMART | SynN_4 | 38 | 168 | IPR006011 | GO:0016020(InterPro) | |
Cone3ag0576 | 310 | Coils | Coil | 142 | 162 | - | - | |
Cone3ag0576 | 310 | Coils | Coil | 104 | 124 | - | - | |
Cone3ag0576 | 310 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 216 | 278 | IPR000727 | - | |
Cone3ag0576 | 310 | Pfam | Syntaxin | 45 | 251 | IPR006011 | GO:0016020(InterPro) | |
Cone3ag0576 | 310 | SMART | tSNARE_6 | 211 | 278 | IPR000727 | - | |
Cone3ag0576 | 310 | FunFam | Syntaxin 132 | 209 | 309 | - | - | |
Cone3ag0576 | 310 | Pfam | SNARE domain | 253 | 304 | IPR000727 | - | |
Cone3ag0576 | 310 | PANTHER | SYNTAXIN | 46 | 297 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone3ag0576 | Cone-Chr3:2843996 | Cone5ag1736 | Cone-Chr5:12339572 | 7.48E-65 | dispersed | |
Cone10ag0552 | Cone-Chr10:2571135 | Cone3ag0576 | Cone-Chr3:2843996 | 2.20E-199 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone3ag0576 | K08486 | - | csv:101220775 | 415.616 |