Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0576 ATGAACGACCTAATGACCAAATCCTTCACTAACTACGTAGATCTAAAGAAGGCAGCCATGAAAGACCTAGATCTCGAATCTGGCAACCTAGAGATGTCATCAGCAACAATACATATGGACAACGATCTTAACCAATTCCTAGCAGAGGCTGAGAGGGTCAAAACCGAAATGGACTGCATCAAATCCCTCCTCCTCAATCTCCAACAAGCAAACGAAGAGAGCAAATACCTACACAAACCCGAACCCCTGAAAGCCCTGCGCGAAAAAATCAATTCTGACATCCTCACTGTCCTGAAAAACGCACGGGCCATCCAAACTCACCTCGAAGAGATGGACCGTGCCAATGCGACCTACAAACGACTCTCGGGCCAGAAACAGAACGACAAAAGCTTCACGCCGATTTACCGGGCCCGGATCGGGGTCACGAATGGGTTGAGAAAGCGACTCAAGGAGCTCATGATGGAATTTCAAACTCTCCGACAGAAGATGATGACAGAGTACAAGGAAACAGTCGGCAGGAGATACTTTACGGTGACAGGGGAGTATCCGGGGGAAGAGGCGATAGAGAAGATCATATCGGAGGGAGGGGAGGAGTATATGGGCCAGGCCATCAAACAACATGGGAGGGGTAAGGTGGTTGAGATGGTTGTGGAGATTAAGGACAGGTACGACGGGGCAAAGGAAGTGGAGAAGAGTCTGTTGGAACTGCATAGGCTGTTTATGGACATGGCGGTTATGGTGGAGGCGCAAGGGGAGAAGATGGATGATATCGAACACCATGTTTTGAGTGCTGGGCAGTATGTTAGTGATGGGACTAAGAGTTTGAAGACTGCGAAGGAGTATCAGAGGAGTAGTAGGAAGTGTATGTGTTTGGGAATTATTCTTCTGCTTGTGATTGTCCTTGCTATTGTCATAGGTGTGACCACTTCTTGA 933 48.23 MNDLMTKSFTNYVDLKKAAMKDLDLESGNLEMSSATIHMDNDLNQFLAEAERVKTEMDCIKSLLLNLQQANEESKYLHKPEPLKALREKINSDILTVLKNARAIQTHLEEMDRANATYKRLSGQKQNDKSFTPIYRARIGVTNGLRKRLKELMMEFQTLRQKMMTEYKETVGRRYFTVTGEYPGEEAIEKIISEGGEEYMGQAIKQHGRGKVVEMVVEIKDRYDGAKEVEKSLLELHRLFMDMAVMVEAQGEKMDDIEHHVLSAGQYVSDGTKSLKTAKEYQRSSRKCMCLGIILLLVIVLAIVIGVTTS 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2843996 2844949 - Conep03aG0059400.1 Cone3ag0576 434035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0576 310 Gene3D - 38 171 - -
Cone3ag0576 310 SUPERFAMILY t-snare proteins 40 271 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone3ag0576 310 CDD SNARE_syntaxin1-like 216 277 - -
Cone3ag0576 310 ProSitePatterns Syntaxin / epimorphin family signature. 222 262 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone3ag0576 310 Gene3D - 212 309 - -
Cone3ag0576 310 CDD SynN 46 198 IPR006011 GO:0016020(InterPro)
Cone3ag0576 310 SMART SynN_4 38 168 IPR006011 GO:0016020(InterPro)
Cone3ag0576 310 Coils Coil 142 162 - -
Cone3ag0576 310 Coils Coil 104 124 - -
Cone3ag0576 310 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 216 278 IPR000727 -
Cone3ag0576 310 Pfam Syntaxin 45 251 IPR006011 GO:0016020(InterPro)
Cone3ag0576 310 SMART tSNARE_6 211 278 IPR000727 -
Cone3ag0576 310 FunFam Syntaxin 132 209 309 - -
Cone3ag0576 310 Pfam SNARE domain 253 304 IPR000727 -
Cone3ag0576 310 PANTHER SYNTAXIN 46 297 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0576 Cone-Chr3:2843996 Cone5ag1736 Cone-Chr5:12339572 7.48E-65 dispersed
Cone10ag0552 Cone-Chr10:2571135 Cone3ag0576 Cone-Chr3:2843996 2.20E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0576 K08486 - csv:101220775 415.616