Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0598 ATGGCTTTGAAAAGGAGTGACCTTATCATAATAGCTACCCAATCTTCCCTATTGTTCATCCTAACTATATTGCTAAGTTCTGGTTCAAGTTACGCAACTGTTACCGACATTTACTGCCTGAAAACCATCAAGGATTCTCTCCAAGATCCTTACAACTACCTAAATACTTCATGGAATTTCAACAACAATACGGAGGGATTCATCTGTAAATTCACTGGAATCGAATGCTGGCATCCAGATGAAAACAAAGTCCTAAACATCCATCTTCCAGAAATGGGACTAAAGGGACCATTCCCTCGTGGCATAGAGAACTGCTCGAGCTTAACGGGCCTAGACCTTTCCAACAACCAGATCTCCGGGCCAATCCCATCCGACATATCCAAACTGATCCCTTTCATCACATCCCTTGATCTTTCGTCGAATAATTTATCTGGCTCGATACCTGTGAGTCTCGCGAATTGCACTTATCTGAACACTCTTAAGCTCGATGATAATGCATTATCAGGCCAAATCCCGCTTGAACTGGGCCTGCTGGGCCGGATGAAGACGTTTTCAGTTAAGAACAATTACTTGACGGGCCAGGTTCCAATTTTTACCAGTGAGAACATTACGTCGAGCAGTTATTCGAATAATCCAGGACTTTGTGGGGTGCCTTTGAAAGCTTGTCCTGGTACTGCTAAGAAATCTCATGCTGGAGTCATTGCTGCTGCTGCTGCTGCTGGGGTCACCTTTACTGCTTTCATTGTAGGGATTGTTTTGTACTACTTCTCGCGTGGAGTTGTTATCAGGAAGAAGAATGATGATCCGGAAGGTAACAAATGGGCGAAGAGCATTACAGGGACAAAAGGGATCAAGGTTTCGATGTTTGGGAATTCCATTTCCAAAATGAGGTTGAGCGATCTCATGAAAGCTACTAACAGTTTCAGCAAAGACAACATCATAGGAGGTGGAAGAACAGGAACAATGTACAAGGCACTACTTTCCGATGGCTCTTCCCTCATGATCAAGAGATTACAAGATTCTCAACGTTTAGAGAAAGAATTCATCTCAGAAATGAACACACTAGGAAGTGTGAGACACAGGAATCTAGTCCCCCTATTCGGATTCTGCGTGGCAAAAAGGGAGAGACTTCTAGTCTACAAATACATGGAAAACGGAACACTCTATGACAACCTACATCCATCTGACCCAGAGAGTAAGACCATGGACTGGCCTTTAAGGCTTCGAATTGGGATAGGAGCCGCTAAAGGCTTAGCGTGGCTTCACCATAGCTGCAACCCTCGAATCATCCACAGAAACATAAGTTCCAAATGCATTCTCTTGGACCGAGATTTCGAGCCCAAATTATCTGATTTCGGGCTAGCGCGGCTCATGAACCCGATTGATACCCATTTGAGCACGTTTGTGAATGGAGAGTTTGGTGACTTGGGCTATGTTGCTCCGGAATATGCACGCACTTTGATGGCAACTCCAAAAGGCGATGTTTATAGCTTTGGAGTTGTTTTGTTAGAGTTGATTACAGGCGAAAAGGCAACCAATGTGGCTAATGCTCCGGAAACATTCAAGGGAAGTTTGGTTGAGTGGGTTGACCAGTTGTCAAGTAACTTGCTTTTTCAAACTGCAATTGACAAGTCGTTGCTTGGGAACGGTTTTGACGGCGAGCTGTTCCAGTTCCTTAGAGTCGCGTGGAACTGTGTTTCTCCGGGTCCCAAGGAGAGGCCTACCATGTTTGAAGTTTACCAGCTCCTTAGAGCTATTGGGGAGAAGTACCATTTTAGCGCGGAGGATGATATCTTGGTGCCTACAAATAATGGCGATTACAATCTTCCAGATGAACTTATTGTCGCTCGAGAAACAGCTGAGAGGAATTGA 1872 44.6 MALKRSDLIIIATQSSLLFILTILLSSGSSYATVTDIYCLKTIKDSLQDPYNYLNTSWNFNNNTEGFICKFTGIECWHPDENKVLNIHLPEMGLKGPFPRGIENCSSLTGLDLSNNQISGPIPSDISKLIPFITSLDLSSNNLSGSIPVSLANCTYLNTLKLDDNALSGQIPLELGLLGRMKTFSVKNNYLTGQVPIFTSENITSSSYSNNPGLCGVPLKACPGTAKKSHAGVIAAAAAAGVTFTAFIVGIVLYYFSRGVVIRKKNDDPEGNKWAKSITGTKGIKVSMFGNSISKMRLSDLMKATNSFSKDNIIGGGRTGTMYKALLSDGSSLMIKRLQDSQRLEKEFISEMNTLGSVRHRNLVPLFGFCVAKRERLLVYKYMENGTLYDNLHPSDPESKTMDWPLRLRIGIGAAKGLAWLHHSCNPRIIHRNISSKCILLDRDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLMATPKGDVYSFGVVLLELITGEKATNVANAPETFKGSLVEWVDQLSSNLLFQTAIDKSLLGNGFDGELFQFLRVAWNCVSPGPKERPTMFEVYQLLRAIGEKYHFSAEDDILVPTNNGDYNLPDELIVARETAERN 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2962451 2965240 + Conep03aG0061600.1 Cone3ag0598 434057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0598 623 Pfam Leucine rich repeat N-terminal domain 36 77 IPR013210 -
Cone3ag0598 623 CDD STKc_IRAK 314 583 - -
Cone3ag0598 623 Pfam Leucine Rich Repeat 107 129 IPR001611 GO:0005515(InterPro)
Cone3ag0598 623 Pfam Leucine Rich Repeat 133 154 IPR001611 GO:0005515(InterPro)
Cone3ag0598 623 SUPERFAMILY Protein kinase-like (PK-like) 287 583 IPR011009 -
Cone3ag0598 623 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 383 596 - -
Cone3ag0598 623 ProSiteProfiles Protein kinase domain profile. 308 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0598 623 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 269 382 - -
Cone3ag0598 623 Pfam Protein tyrosine and serine/threonine kinase 311 513 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0598 623 PANTHER RECEPTOR-LIKE PROTEIN 55 60 582 - -
Cone3ag0598 623 Gene3D Ribonuclease Inhibitor 35 224 IPR032675 -
Cone3ag0598 623 Gene3D Phosphorylase Kinase; domain 1 269 382 - -
Cone3ag0598 623 SUPERFAMILY L domain-like 33 220 - -
Cone3ag0598 623 Gene3D Transferase(Phosphotransferase) domain 1 383 601 - -
Cone3ag0598 623 FunFam Nuclear pore complex protein NUP107 33 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0887 Cone-Chr16:9226861 Cone3ag0598 Cone-Chr3:2962451 2.75E-131 dispersed
Cone19ag0996 Cone-Chr19:7471069 Cone3ag0598 Cone-Chr3:2962451 7.83E-145 dispersed
Cone2ag0165 Cone-Chr2:885313 Cone3ag0598 Cone-Chr3:2962451 2.85E-135 dispersed
Cone3ag0598 Cone-Chr3:2962451 Cone6ag1315 Cone-Chr6:10561015 2.65E-75 dispersed
Cone10ag0573 Cone-Chr10:2673369 Cone3ag0598 Cone-Chr3:2962451 2.34e-316 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82667 PF00069 Pkinase 2.80E-76 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0598 - - - 0.0