Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0611 ATGGAGGTAGTTCTTCGGCCTTCATGGTTATGGAGCTCAGCTAACTTCATATCCCCTACATCCCATAACGCCATTAAAAAATATTCATCACCACCGCTTACAATTCTACCTGGAAAGTTGTCTCATTTTCCTCCTCATTTCTTCTGCAACGGCGTTTCAATCCCTCCTCACTTTTCTCTTCCCGTTTCATTTGCAACACCAGATAGCCAACTGGGTGTAGAGGCCAGTGCTGATGTACAAGAATGGCAAATGCAAGATTTCTATTCATTAAGGAGAGATGTAAAGACGACCGCAGAGCGTGTAGAAGAGATTAGAGCCTCTGTGGGTTTGCAACAACTGGAAAAAGAGGTTGCAGATTTAGAACAGAAAGCATCGGATGAATCTTTTTGGGATGATCGGTCTAAGGCGCAAGAGGTTCTCTTGGCCCTAACCGACGTGAAGGATAAGATAAAGTTGCTAACTGAATTCCAAACTCAAATTGAAGACGCAGAAACTATAGTGAAGCTGACAGAGGAGATGGATTCTGCAGATACCGGACTTCTTGAAGAGGCTGCTAATACCATTAAAGAGTTGAACAAGGCACTGGATCGGTTTGAGTTGACACAACTTCTTTCCGGTCCCTACGATAAAGAAGGTGCTGTTATCTCTATCTCAGCTGGTGCCGGCGGTACTGATGCACAGGATTGGGCTGACATGCTTCTAAGGATGTATGTGAGATGGGGAGAGAAGCACAGCTATAAGACAAGAGTGGTAGAGAAATCCTTAGGAGAAGAAGCCGGAATAAAATCTGCCACAATAGAAGTTGAAGGCCGTTATGCTTATGGATATATTTCCGGAGAAAAAGGAACACATAGGATAGTTAGACAGTCTCCCTTCAACTCCAAAGGTCTTAGACAGACAAGCTTTTCGGGTGTTGAAGTGATGCCTCTTCTTCCAGAAGAGTCATTGAATGTTGAATTGCCGGAAGAGGATCTGGAAATAAGTTTTTCAAGGGCAGGTGGGAAAGGAGGTCAGAATGTGAACAAGGTTGAAACTGCAGTTCGGATTACCCACATCCCAACTGGAGTTACCGTTCGCTGCACAGAAGAGAGGTCACAACTGGCAAACAAGATAAAGGCACTAAGCCGCTTGAAGGCGAAGCTGTTAGTGATTGCAGAGGAGCAAAGAGCTTCAGAAATCAAACAGATAAGAGGAGATAAGGTTAAGGCGGAGTGGGGCCAGCAGATTAGGAACTATGTTTTCCATCCGTACAAACTTGTGAAAGATGTGAGGACAGGGTTTGAGACATCAGATATTACTTCTGTAATGGATGGTGAATTGGAGTCCTTCATCAAAGCTTACTTGAAATACAAGTACAACATGTCTGTTTCTACCAGTGAGGTTTAG 1386 44.01 MEVVLRPSWLWSSANFISPTSHNAIKKYSSPPLTILPGKLSHFPPHFFCNGVSIPPHFSLPVSFATPDSQLGVEASADVQEWQMQDFYSLRRDVKTTAERVEEIRASVGLQQLEKEVADLEQKASDESFWDDRSKAQEVLLALTDVKDKIKLLTEFQTQIEDAETIVKLTEEMDSADTGLLEEAANTIKELNKALDRFELTQLLSGPYDKEGAVISISAGAGGTDAQDWADMLLRMYVRWGEKHSYKTRVVEKSLGEEAGIKSATIEVEGRYAYGYISGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEESLNVELPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDKVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDITSVMDGELESFIKAYLKYKYNMSVSTSEV 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3033151 3035440 + Conep03aG0062900.1 Cone3ag0611 434070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0611 461 Gene3D - 311 407 - -
Cone3ag0611 461 Coils Coil 103 123 - -
Cone3ag0611 461 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 70 453 - -
Cone3ag0611 461 Gene3D Release factor 92 208 - -
Cone3ag0611 461 Pfam RF-1 domain 316 424 IPR000352 GO:0003747(InterPro)|GO:0006415(InterPro)
Cone3ag0611 461 SMART PCRF_a_2 168 280 IPR005139 GO:0006415(InterPro)
Cone3ag0611 461 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 331 347 IPR000352 GO:0003747(InterPro)|GO:0006415(InterPro)
Cone3ag0611 461 Coils Coil 181 201 - -
Cone3ag0611 461 Hamap Peptide chain release factor 2 [prfB]. 86 452 IPR004374 GO:0005737(InterPro)|GO:0006415(InterPro)|GO:0016149(InterPro)
Cone3ag0611 461 Pfam PCRF domain 113 305 IPR005139 GO:0006415(InterPro)
Cone3ag0611 461 Gene3D - 215 445 - -
Cone3ag0611 461 NCBIfam peptide chain release factor 2 95 449 IPR004374 GO:0005737(InterPro)|GO:0006415(InterPro)|GO:0016149(InterPro)
Cone3ag0611 461 SUPERFAMILY Release factor 113 452 IPR045853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0611 K02836 - - vvi:100265078 693.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0493 Cone-Chr17:2404348 Cone3ag0611 Cone-Chr3:3033151 9.37E-43 dispersed
Cone19ag0613 Cone-Chr19:5375648 Cone3ag0611 Cone-Chr3:3033151 1.39E-68 dispersed
Cone1ag1551 Cone-Chr1:57382327 Cone3ag0611 Cone-Chr3:3033151 4.06E-73 dispersed
Cone20ag0923 Cone-Chr20:6641023 Cone3ag0611 Cone-Chr3:3033151 1.78E-42 dispersed
Cone3ag0611 Cone-Chr3:3033151 Cone13ag0596 Cone-Chr13:6148064 9.98E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g888 . . Bda04g00081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag0611 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005567 1 4 1 2 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 40