Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0612 ATGCTGCTGCTGGTCTTCTCTTTGCTCTCTCTCTTCCTCTTTCTATTTCTGCTATACAGATTCGCTACTGCTTATGGTGATTTCACTTTAATGTCGAAAAGGCATGTGAAGCACGAGGAGATTGAAGATAAGGTTATTTGGATTACTGGTGCTAGCCGTGGAATCGGGGAGGTTCTTGCTAAACAACTTGCATCTTTAGGGGCCAAGCTCATTATTTCTGCACGGAGTGAAACTGATTTGGAGCGAGTCAAGAATCAGCTCTCTGGTAAACATGCACCTGGTGGGGTGAAGATTTTACCTCTGGATTTGACATCTGGTGAAAATTATCTTCAGGAGGCTGTAGAAAAAGCAGAATCCCTTTTTCCTGGTGCTGGTGTTGACTATATGATCCATAACGCTGCTTTTGAGCGTCCCAAAACTTCAGCTTTGGATGTATCTGAGGAAGGTCTAAAGGCAACATTTGATGTAAATGTTCTGGGGACTATATCTCTCACACGATTTCTTGCACCTTTCATGCTAAAGCGGGGAAGAGGTCATTTTGTTGTCATGAGCAGCGCTGCAGGAAAGACCCCTGCACCAGGTCAGGCTGTATATTCGGCCTCCAAATTTGCACTAAATGGGTACTTTCACTCCTTGCGCTCTGAGCTTTATACTAATGGAATTAAAGTGACTGTGATTTGTCCTGGACCGATACAAACTTCAAATGGTTCTGGTTCAAAATCCGTAGAAAAGAAAGGTTCTTTAGAGAAGCGTCTTACATCAGAAAAGTGTGCAGAGCTTACAATCATCGCTGCTAGTCACGGTCTTAAAGAAGTATGGATATCAAATCAGCCTGTACTTGCCGTCATGTATTTAGTGCAGTATATGCCAACCATCGGCTACTGGCTCATGGACAAGGTTGGTCGGAATCGAGTAGAAGCTGCTGCACAGAAGGGCAACACTTATTCATTGAGCTTGTTGTTTGGGAAAAAGAAGGCAACTTAG 984 43.7 MLLLVFSLLSLFLFLFLLYRFATAYGDFTLMSKRHVKHEEIEDKVIWITGASRGIGEVLAKQLASLGAKLIISARSETDLERVKNQLSGKHAPGGVKILPLDLTSGENYLQEAVEKAESLFPGAGVDYMIHNAAFERPKTSALDVSEEGLKATFDVNVLGTISLTRFLAPFMLKRGRGHFVVMSSAAGKTPAPGQAVYSASKFALNGYFHSLRSELYTNGIKVTVICPGPIQTSNGSGSKSVEKKGSLEKRLTSEKCAELTIIAASHGLKEVWISNQPVLAVMYLVQYMPTIGYWLMDKVGRNRVEAAAQKGNTYSLSLLFGKKKAT 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3035396 3038819 - Conep03aG0063000.1 Cone3ag0612 434071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0612 327 PRINTS Glucose/ribitol dehydrogenase family signature 219 236 IPR002347 -
Cone3ag0612 327 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Cone3ag0612 327 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Cone3ag0612 327 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Cone3ag0612 327 PRINTS Glucose/ribitol dehydrogenase family signature 45 62 IPR002347 -
Cone3ag0612 327 Pfam short chain dehydrogenase 44 236 IPR002347 -
Cone3ag0612 327 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 1 326 - GO:0016020(PANTHER)
Cone3ag0612 327 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 185 213 IPR020904 GO:0016491(InterPro)
Cone3ag0612 327 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 40 299 IPR036291 -
Cone3ag0612 327 Gene3D - 26 305 - -
Cone3ag0612 327 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 44 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0612 K11165 - - csv:101221443 512.686
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0612 Cone-Chr3:3035396 Cone20ag0705 Cone-Chr20:4532946 2.89E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g887 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag0612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010778 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 2 1 1 31