Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0616 ATGAAAATCGAGCAAACCTCCTGCCGCGACGTTCCGAGATTGAATTTCGAGAATCTCAGAGTGATCTCAGCTCTTGGGAGGGGAGCTAAGGGCGTGGTGTTTCTAGCAGAAAATATGGTTTCTGGAGAATCGGTTGCTCTGAAAGTGATTTACAGAGCTCTAATTGAGAGAAAGGATAAATCCGTCGATAATGCCAGTACTGATGAGTACAGAAGGATCTGCTTCGAGCAGCAGGTGCTACACCGTTTTGATCATCCGCTTTTACCCAAATTGCGTGGAGTTTTAGATACTGAGAAAATAATCGGTTACGCCATTGATTACTGCTCCGGTCGCGATCTGAATTCTCTCAGAAAGAGACAGACAGAGAAGATGTTCGCCGATGACGCGATTAGGTTTTATGCTGCGGAATTGATCTTGGCATTAGAGTATCTTCATAGCTTAGGGATCGTTTACAGGGATCTGAAACCAGAAAACATCATGATACAAGGAACCGGTCATATAATGCTCGTCGATTTCGATCTCTCTACAAAACTATCATTAAAATTATCTCCTAAAATTTCCAGTTCATCCAACAATAAGCCTTCCAATCCAATCAAATCTCCATCCGTCAAGAAAAAACGGTTCTCTCCATTCCGTGCGTTCTGCAACTCGGGCATATCACCCCAAGTAGACACGGTCGACTCGGGCACCAACTCCGATCGGTCAGGGTCAGACTCAGCCGAGAAATCCAACTCATTCGTCGGCACAGAGGAATACATCCCGCCCGAGATCGTTGCTGGCAACGGTCACGATTTCTCTGCGGACTGGTGGTCCCTTGGTGTAGTTCTACACGAGATGCTATATGGAACGACACCGTTTAGAGGATCAGACAGGAAGGAGACGTTTTATCGGATATTGACTAAGACGCCCGAGCTAACTGGCGAAGCGACGTCGTTACGGGACTTGATTAGAAAATTACTGGAAAAGGACCCGAAGCAGAGAATAAAACTGGAGGAGATAAAAAGACATGAATTCTTTAAAGGAATCGAATGGGATTCTGTTACGAGAATCTCCCGGCCGCCGTATATTCCTCCTGATAGTCATCGGAGTGAGATGGATGAGGGTATTTATGGAAATAAGAAAATAGATGTGGAATTATTTGTTGAGGAGATTTTTGGAGATAGTACTGATCATCAGCTTGAAGGTAAGGATTCCGGTAAGGATGATCAGAAGGCGTGGGTCAAAGAAGTTCACCTTCAACCTTACGAATTTTGTATATTCTAA 1263 44.58 MKIEQTSCRDVPRLNFENLRVISALGRGAKGVVFLAENMVSGESVALKVIYRALIERKDKSVDNASTDEYRRICFEQQVLHRFDHPLLPKLRGVLDTEKIIGYAIDYCSGRDLNSLRKRQTEKMFADDAIRFYAAELILALEYLHSLGIVYRDLKPENIMIQGTGHIMLVDFDLSTKLSLKLSPKISSSSNNKPSNPIKSPSVKKKRFSPFRAFCNSGISPQVDTVDSGTNSDRSGSDSAEKSNSFVGTEEYIPPEIVAGNGHDFSADWWSLGVVLHEMLYGTTPFRGSDRKETFYRILTKTPELTGEATSLRDLIRKLLEKDPKQRIKLEEIKRHEFFKGIEWDSVTRISRPPYIPPDSHRSEMDEGIYGNKKIDVELFVEEIFGDSTDHQLEGKDSGKDDQKAWVKEVHLQPYEFCIF 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3050306 3051778 + Conep03aG0063400.1 Cone3ag0616 434075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0616 420 Gene3D Phosphorylase Kinase; domain 1 19 111 - -
Cone3ag0616 420 PANTHER FLIPPASE KINASE 1-RELATED 9 361 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone3ag0616 420 Gene3D Transferase(Phosphotransferase) domain 1 238 358 - -
Cone3ag0616 420 Gene3D Transferase(Phosphotransferase) domain 1 112 178 - -
Cone3ag0616 420 FunFam Serine/threonine-protein kinase OXI1 112 180 - -
Cone3ag0616 420 FunFam Serine/threonine-protein kinase OXI1 241 358 - -
Cone3ag0616 420 MobiDBLite consensus disorder prediction 222 246 - -
Cone3ag0616 420 Pfam Protein kinase domain 240 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0616 420 Pfam Protein kinase domain 21 181 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0616 420 ProSiteProfiles Protein kinase domain profile. 19 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0616 420 SUPERFAMILY Protein kinase-like (PK-like) 16 365 IPR011009 -
Cone3ag0616 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0616 420 SMART serkin_6 19 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0616 420 MobiDBLite consensus disorder prediction 184 204 - -
Cone3ag0616 420 MobiDBLite consensus disorder prediction 184 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1483 Cone-Chr11:10511741 Cone3ag0616 Cone-Chr3:3050306 1.05E-95 dispersed
Cone18ag0111 Cone-Chr18:581489 Cone3ag0616 Cone-Chr3:3050306 1.03E-96 dispersed
Cone3ag0616 Cone-Chr3:3050306 Cone8ag1349 Cone-Chr8:10827919 2.38E-68 dispersed
Cone10ag0589 Cone-Chr10:2760059 Cone3ag0616 Cone-Chr3:3050306 5.29E-249 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82668 PF00122 E1-E2_ATPase 9.90E-09 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0616 K20714 - csv:101223223 457.988