Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0624 ATGACCATGATAGATCTTACACGATTTGTAGTAGTGGGTCTGTTGCTTTTCTCGAATTTGTTAACCGGGTCTTGCAACTTGGTTTTCCAAGTAGAGCATAAGTTCAAGGGGCATGAGAAGTCTTTGAGTTCATTGAAAGCTCATGATATGCACCGCCATGGTAGACTCCTCTCTGCTATCGATCTCGAACTGGGTGGAAATGGGCAGCCTTCACAAACTGGGCTTTACTTTGCTAAAATTGGACTTGGGACTCCTCCAAAGGACTATTATGTGCAAGTAGATACCGGAAGTGACATTCTATGGGTGAATTGTGGAGGCTGTGAAAACTGCCCTAGGAAAAGTGATCTTGGCATAGAATTGACACTATTCGATCCAAAGAGCTCAAGCACTTCAAGCTTGGTTACTTGTGATCAAACTTTTTGCATGTCGACATATAGTGGTCCAATTCCCGGATGCAAGCCCAACTTGGAATGCCAGTATAAAGTTATGTATGGAGATGGAAGCTCAACTTCTGGATATTTCGTGAAGGATTATGTACAGCTTGATAAAGTGACTGGAAACCTTCAAACTATAGCAACAAATGGGAGTGTAATTTTTGGGTGTGGAGATCAACAAGATGGGCAGTTAAAAAGTTCAGCAGAAGCACTTGACGGGATACTTGGTTTCGGACAAGCAAATTCATCCATGATTTCGCAGCTAGCTTCTTCTGGAAAAGTGAAAAAGATTTTTTCACACTGCTTGGATGTTACAAATGGAGGTGGGATTTTTGCCATTGGAGAGGTGGTGCACCCAGTAGTGAATAAGACAACTCCATTGGTTCAGTACCAGTCACATTACAACGTTGTTCTGACGGATATTGAGGTCGGTAATAGCATTCTAAATCTACCCTCTGATGTATTTGACACAGATTACCAGAGAGGAACAATAATTGACAGTGGTACAACACTGGCTTATCTTCCTGAGGCTGTTTATGACCCACTAACAAATAAGATTTTAGAAGAGCAGCCAGGATTGAGTTTACATACTGTTGAGAACCAGTTCAATTGCTTTCAGTATACTGACAATGTCGATGATGCATTTCCAACAGTGACATTCTATTTTCAAGGTTCCTTAAAACTGACCGTTTATCCTCATGAGTATTTGTTCCAGATTCGTCAAAATGTTTGGTGCATCGGTTGGCAGAACAGTGGCACACAGACTAAGGATGGGAGATACACCACTCTTTTGGGAGATTTGGTGCTTCAAAACAAGCTAGTTCTCTATAACCTGGAAGATCAGACAATCGGGTGGACCCCATACAATTGCTCTTCAAGCATCCAGGTGAGAGATGATAGCTCCAAAGCAGTATATACAGTTGGAGCTTATAATCTTTCTTCCGGGTCGAGCCTAATAACGGGAAGAACCCTAACATTCTTGCTACTGATATTCGCTTTGCTGCACAGTTATACGAATTAG 1455 41.86 MTMIDLTRFVVVGLLLFSNLLTGSCNLVFQVEHKFKGHEKSLSSLKAHDMHRHGRLLSAIDLELGGNGQPSQTGLYFAKIGLGTPPKDYYVQVDTGSDILWVNCGGCENCPRKSDLGIELTLFDPKSSSTSSLVTCDQTFCMSTYSGPIPGCKPNLECQYKVMYGDGSSTSGYFVKDYVQLDKVTGNLQTIATNGSVIFGCGDQQDGQLKSSAEALDGILGFGQANSSMISQLASSGKVKKIFSHCLDVTNGGGIFAIGEVVHPVVNKTTPLVQYQSHYNVVLTDIEVGNSILNLPSDVFDTDYQRGTIIDSGTTLAYLPEAVYDPLTNKILEEQPGLSLHTVENQFNCFQYTDNVDDAFPTVTFYFQGSLKLTVYPHEYLFQIRQNVWCIGWQNSGTQTKDGRYTTLLGDLVLQNKLVLYNLEDQTIGWTPYNCSSSIQVRDDSSKAVYTVGAYNLSSGSSLITGRTLTFLLLIFALLHSYTN 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3084087 3087735 + Conep03aG0064200.1 Cone3ag0624 434083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0624 484 CDD pepsin_A_like_plant 76 435 IPR034161 -
Cone3ag0624 484 Gene3D Acid Proteases 263 442 IPR021109 -
Cone3ag0624 484 Pfam Xylanase inhibitor C-terminal 278 431 IPR032799 -
Cone3ag0624 484 SUPERFAMILY Acid proteases 71 438 IPR021109 -
Cone3ag0624 484 ProSiteProfiles Peptidase family A1 domain profile. 76 431 IPR033121 -
Cone3ag0624 484 FunFam Eukaryotic aspartyl protease family protein 66 259 - -
Cone3ag0624 484 Pfam Xylanase inhibitor N-terminal 76 259 IPR032861 -
Cone3ag0624 484 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone3ag0624 484 PRINTS Pepsin (A1) aspartic protease family signature 407 422 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone3ag0624 484 PRINTS Pepsin (A1) aspartic protease family signature 82 102 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone3ag0624 484 PANTHER ASPARTYL PROTEASES 24 435 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone3ag0624 484 Gene3D Acid Proteases 65 260 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0624 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0882 Cone-Chr15:6786029 Cone3ag0624 Cone-Chr3:3084087 4.25E-182 dispersed
Cone18ag0237 Cone-Chr18:1158421 Cone3ag0624 Cone-Chr3:3084087 1.28E-90 dispersed
Cone3ag0624 Cone-Chr3:3084087 Cone5ag1375 Cone-Chr5:8385138 5.06E-110 dispersed
Cone3ag0624 Cone-Chr3:3084087 Cone14ag0898 Cone-Chr14:7180089 5.53E-197 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g877 . . . . . Bpe13g00456 . Bma15g01028 . . . Cma07g00510 . Car07g00446 . . . . . . . . . . . . . . . . . . . . Cone3ag0624 . . . . . . . . . . . . . . Cmo07g00508 . . . Car05g00768 . . Bhi10g02053 Tan05g1355 . . Hepe10g1418 . . . . . . . . . . Csa04g00525 . Cme02g00859
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001410 2 2 2 4 2 2 4 2 2 2 2 2 3 2 2 4 2 1 4 2 2 2 3 2 2 2 2 8 2 1 74