Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0629 ATGAGCCATGAAAACACATTTCAAAATTTTCCCAAGCTCTGTTTTTTTTCTTCTTCTGTGAGCTGCAATAAATCAATGGAAGAGGAGAAGATTGAGGATCATGAACAGGTCCTGGAAGGTGGGATATGGAGTTCGTGTTCGGTGGTGGGTAAGAGTGGAGGCGGAAGCTTTGTAGAGAGAAGGGCAGCTAAGTTTGGAAGTGGGTTCAATGCGCCTAGGATCAATACGCCCAGGTTTCGAACCACTAGCCCTTTGGTCTCACCTGCCGCTCGTTCTCCTCGTCTTACTATTCCACCTGGTATTAGCCCCACTGCCTTGCTTGATTCGCCTCTCATGCTCCCTAATACACAGGGTCTTCCATCTCCTACAACTGGAACTTTTTGTATCCCTTTAAATGATCAAAGCTCGATCCGAAATTCTCTGCTGCTTGAAGATGAATATAAGGGTAGTCCTGTAGATGGTTCATCCTTCGGATTGAAGCCTCCTGATGAGCACAGTTTCACTCCTGGATTTTCTGGTTCTCAAAATCAGGATGTTCTTGATATTGATTATCAGGATCTTATATCAAAGCAACCACCTGTCGACTTTGAATTCTCTGTTCAATGTCAAGAAGCTACCGTGATAAACAGTGGAGGAGATTCATATACTGATATTAACAACTTCAACAACGTGATTATAAATACTACTACTAAACCAGATGAAGTTCAAGCGCATATTCTTAATCAAGCTTCTAATCAAACATCTCTGCCCAATGAATCCATTCAAGCTGAGGATAATGAACCACATCATCATCAACCCGATCAAAGCTTGTACCCAGCATCATTAGGACTAACAAGGAATTCAGAAGATGGATATAACTGGAGAAAATACGGACAAAAACAAGTAAAAGGAAGTGAATATCCTAGAAGCTACTATAAATGTACACATCAAAATTGCCAAGTGAAGAAGAAAGTGGAAAGATCCCCTGATGGTCAAATAACTGAAATCATATACAAAGGTGCCCACAATCATGCAAAACCACACCCATGTCGCGGGGCCCCATTCGGATCAACGTTTCCATCTGACCAGGCTTCAGAGGTGGGTGAAGGAAGTAGGACCTATGTCAAAGCGGAAGGTGGGCCCTTCTGGATGAGTATTCAATCCGATTTGAGGGGTGATGGGTTGGAAAGGGGGACCCCCTCGGCTTCTGTTGTAACTGATGTATCTGATCCGTTATCAACCGCTCGAGGGAAATCTGTTGGGTTGTTTGGATTGGTTCAAACTCCTGAGCTTTCTTCTACTGTTGCTAGTCATGAAGATGATGATGATGATGGGGCCACTCAGGGAAGTGTATCGTTCAGTGATGATGCTGATGATGTAGAATCTGAATCAAAAAGAAGGCGGATGGAGACCTGTCTGATTGAAACAAATTTGGTGTCTAGATCTATCAGAGAACCAAGAGTTGTTGTCCAAATAGAGACTGAAATAGACATTCTTGATGATGGTTACCGCTGGAGAAAGTATGGGCAAAAAATCGTCAAAGGGAACCCTAATCCTAGGAGCTACTACAAATGCACGAGTCCTGGATGTTTAGTTAGAAAGCACGTAGAGCGGGCCCCACACGATCTCAAATTTGTGATCACAACATATGAAGGAAAACACAACCATGAGGTGCCTGCTGCTAGAAACAGCAACCAAATAAATTCAAGTGGCAATGGTGATAATGCCCCTTCTGCTGTTTCCTGTCAGTCATCCGTGACCTTACCTAGAAGCTTTACCATTCCTTTGCCCGATCAAAGCCACCTTCCTGACCCCACAACTTATTTCAAACGTAAACCTGAATTTAGCGATGAGTATTTGAGATCAGGTTTTATCGGGAGTTTTAGTAATGACATGAAAATGGGGACTCCATTCATGTTTCAAATGAAGCTTCCTTCCTTGCAGAGTACTCAGTCTTATGGCTCATTTGGAATAAATTCGGGTTCTTTGGCACCGGGGATTTGGGATTTTCCTGTTTCTCTGCCGTCAAATCATCTTCCAATGCGAAATTATTCAGCAGCTGGATATAATTTTAACAGTGGAATATCAATGGCTCAGATGCAGCCGTCTATGCCTGTGCAGCAGATGAGGGAGATGAATGAGGTCAGGTATCTAAAGCCCAAACAAGAACAGAATGATGATAGTGTTTATGATGCTTGTTCATCAACGGTGGGGTATCAACAAATCATGGGAAAGTTTCCCTAG 2223 43.05 MSHENTFQNFPKLCFFSSSVSCNKSMEEEKIEDHEQVLEGGIWSSCSVVGKSGGGSFVERRAAKFGSGFNAPRINTPRFRTTSPLVSPAARSPRLTIPPGISPTALLDSPLMLPNTQGLPSPTTGTFCIPLNDQSSIRNSLLLEDEYKGSPVDGSSFGLKPPDEHSFTPGFSGSQNQDVLDIDYQDLISKQPPVDFEFSVQCQEATVINSGGDSYTDINNFNNVIINTTTKPDEVQAHILNQASNQTSLPNESIQAEDNEPHHHQPDQSLYPASLGLTRNSEDGYNWRKYGQKQVKGSEYPRSYYKCTHQNCQVKKKVERSPDGQITEIIYKGAHNHAKPHPCRGAPFGSTFPSDQASEVGEGSRTYVKAEGGPFWMSIQSDLRGDGLERGTPSASVVTDVSDPLSTARGKSVGLFGLVQTPELSSTVASHEDDDDDGATQGSVSFSDDADDVESESKRRRMETCLIETNLVSRSIREPRVVVQIETEIDILDDGYRWRKYGQKIVKGNPNPRSYYKCTSPGCLVRKHVERAPHDLKFVITTYEGKHNHEVPAARNSNQINSSGNGDNAPSAVSCQSSVTLPRSFTIPLPDQSHLPDPTTYFKRKPEFSDEYLRSGFIGSFSNDMKMGTPFMFQMKLPSLQSTQSYGSFGINSGSLAPGIWDFPVSLPSNHLPMRNYSAAGYNFNSGISMAQMQPSMPVQQMREMNEVRYLKPKQEQNDDSVYDACSSTVGYQQIMGKFP 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3107909 3111419 + Conep03aG0064700.1 Cone3ag0629 434088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0629 740 Gene3D WRKY domain 479 545 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0629 740 SUPERFAMILY WRKY DNA-binding domain 485 552 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0629 740 FunFam WRKY transcription factor 270 341 - -
Cone3ag0629 740 MobiDBLite consensus disorder prediction 552 574 - -
Cone3ag0629 740 ProSiteProfiles WRKY domain profile. 487 552 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0629 740 MobiDBLite consensus disorder prediction 425 459 - -
Cone3ag0629 740 MobiDBLite consensus disorder prediction 244 277 - -
Cone3ag0629 740 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 232 562 IPR044810 GO:0003700(InterPro)
Cone3ag0629 740 SMART WRKY_cls 281 339 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0629 740 SMART WRKY_cls 492 551 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0629 740 ProSiteProfiles WRKY domain profile. 282 340 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0629 740 FunFam WRKY transcription factor 57 478 552 - -
Cone3ag0629 740 Gene3D WRKY domain 276 341 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0629 740 MobiDBLite consensus disorder prediction 550 574 - -
Cone3ag0629 740 Pfam WRKY DNA -binding domain 282 337 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0629 740 Pfam WRKY DNA -binding domain 493 550 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone3ag0629 740 SUPERFAMILY WRKY DNA-binding domain 281 340 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0629 K18835 - - mdm:103451420 730.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1277 Cone-Chr14:10214634 Cone3ag0629 Cone-Chr3:3107909 3.33E-109 dispersed
Cone15ag1303 Cone-Chr15:10178582 Cone3ag0629 Cone-Chr3:3107909 5.64E-103 dispersed
Cone3ag0629 Cone-Chr3:3107909 Cone7ag0070 Cone-Chr7:297307 6.20E-75 dispersed
Cone9ag0840 Cone-Chr9:4112644 Cone3ag0629 Cone-Chr3:3107909 1.33E-14 dispersed
Cone10ag0603 Cone-Chr10:2835417 Cone3ag0629 Cone-Chr3:3107909 0 wgd
Cone3ag0629 Cone-Chr3:3107909 Cone5ag0939 Cone-Chr5:4013009 6.91E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g850 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0939 . Cone10ag0603 Cone3ag0629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01024 Cam03g1073 Cec03g1078 Cco03g1071 Clacu03g1044 Cmu03g1634 Cre03g1334 Lsi06g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005091 1 5 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 3 1 1 1 0 1 1 1 1 1 2 3 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45809 PF00013 KH_1 3.20E-05 CL0007 Cone TF