Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag0631 | ATGAATTTCGACGGCATAATTTCAATGTCCTTGGTTACTGAGTCGGAGGGACTCTCACCGTCGTTGAGCGAAGATGCACTGTGGCAAATGAACTTGAGAGCAAGTGAAACAATGGAATCTGGTCAATATCCTGAACATCCTGGAGAGCCAGATTGTTCTTATTACATTAGAACAGGCTTGTGTAGATTTGGAGTGACATGTCGATTTAATCATCCGCATGATAGAAAGCTGGCTATTGCCACTGCAAGGATGAAGGGGGAGTACCCAGAAAGGACTGGACAGCCAGAATGTCAGTACTATCTGAAGACAGGTGCATGCAAGTTTGGACCAACATGCAAGTTTCATCATCCTAGGGAAAGAGCCGGGATTGCCTTGAATATTTTAGGTTACCCACTTCGCAAGAATGAAGCTGAATGTGCATATTATTCAAGAACCGGACAGTGCAAGTTTGGAAGCACATGTAAATTCCACCATCCTCAACCAACTAATATGACGGTCTCACTTCATGGATCTCCTGCTTTCCCAGCTGTCCAATCACCATCTACATCTGATCAGCATTCATATCATGGAGGACCGTCTTTTATTCCTAGCCAAAGGTGGCAAGGTTCTTCTAGTTATGCTCCCCTAGTCATTCCTCAAGGAATAGTGTCAGTTCCAGGTTGGAATGCTTACAGTGGCCAGCTAGGATCGGTGCCATCTTCAGAACAAACAGGAGGAAACAGTCAGATTTATGGAACTTCAAACCAGAGTGAATTGGCAAATCCACCTCAAGCAGCTCTATCTCCGTTCCCCTCTGGCTCTGTCCCTGTAGGCTTTTACACATTACAGAGAGAGAATGTATTTCCTGAAAGACCAGGCCAGCCAGAATGTCAGTTCTACATGAAAACTGGAGATTGCAAATTTGGTGCAGTTTGTCGTTTCCATCATCCAAGAGACAGAGTAGTTCCTCCTCCAGATTGCATATTGAGTCCCCTTGGCCTTCCTTTACGCCCGGGAGAGCCCTTATGCATCTTCTATTCACGATATGGAATCTGCAAATTTGGCCCAAGCTGCAAATTTGACCACCCAATGGGAATATTCACACATGATCTATCTGCGTCATCCTCAGCCGATGACTTGGTCCCTGTTTTTTTGAGTTCATCATCTGGAGCTACTGCCTTAAATTTTTCAAATGAGGCTCTGGTTGAAGCAGTCGCTGTAAAGACAAGACAGCTTTCACTCTCTGAGACTAGACAGATGCCTTCTGATGAGGACAATATCGATAATACAGAGAGCTGA | 1278 | 44.91 | MNFDGIISMSLVTESEGLSPSLSEDALWQMNLRASETMESGQYPEHPGEPDCSYYIRTGLCRFGVTCRFNHPHDRKLAIATARMKGEYPERTGQPECQYYLKTGACKFGPTCKFHHPRERAGIALNILGYPLRKNEAECAYYSRTGQCKFGSTCKFHHPQPTNMTVSLHGSPAFPAVQSPSTSDQHSYHGGPSFIPSQRWQGSSSYAPLVIPQGIVSVPGWNAYSGQLGSVPSSEQTGGNSQIYGTSNQSELANPPQAALSPFPSGSVPVGFYTLQRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRDRVVPPPDCILSPLGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTHDLSASSSADDLVPVFLSSSSGATALNFSNEALVEAVAVKTRQLSLSETRQMPSDEDNIDNTES | 425 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 3113517 | 3117611 | + | Conep03aG0064900.1 | Cone3ag0631 | 434090 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag0631 | 425 | SUPERFAMILY | CCCH zinc finger | 135 | 161 | IPR036855 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | SUPERFAMILY | CCCH zinc finger | 95 | 120 | IPR036855 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | SMART | c3hfinal6 | 284 | 311 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | SMART | c3hfinal6 | 133 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | SMART | c3hfinal6 | 330 | 357 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | SMART | c3hfinal6 | 91 | 118 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | SUPERFAMILY | CCCH zinc finger | 51 | 74 | IPR036855 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | ProSiteProfiles | Zinc finger C3H1-type profile. | 284 | 312 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | PANTHER | PROTEIN PHOSPHATASE RELATED | 24 | 358 | IPR050974 | GO:0003729(PANTHER) | |
| Cone3ag0631 | 425 | FunFam | Zinc finger nuclease 2 | 45 | 122 | - | - | |
| Cone3ag0631 | 425 | ProSiteProfiles | Zinc finger C3H1-type profile. | 47 | 74 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 47 | 72 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 285 | 311 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 136 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 93 | 118 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 331 | 357 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | SUPERFAMILY | CCCH zinc finger | 333 | 357 | IPR036855 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | ProSiteProfiles | Zinc finger C3H1-type profile. | 330 | 358 | IPR000571 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | SUPERFAMILY | CCCH zinc finger | 288 | 313 | IPR036855 | GO:0046872(InterPro) | |
| Cone3ag0631 | 425 | Gene3D | - | 123 | 168 | - | - | |
| Cone3ag0631 | 425 | Gene3D | - | 282 | 369 | - | - | |
| Cone3ag0631 | 425 | Gene3D | - | 45 | 122 | - | - | |
| Cone3ag0631 | 425 | ProSiteProfiles | Zinc finger C3H1-type profile. | 91 | 119 | IPR000571 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag0862 | Cone-Chr11:7153370 | Cone3ag0631 | Cone-Chr3:3113517 | 4.99E-38 | dispersed | |
| Cone17ag0492 | Cone-Chr17:2390133 | Cone3ag0631 | Cone-Chr3:3113517 | 9.81E-27 | dispersed | |
| Cone20ag0922 | Cone-Chr20:6637882 | Cone3ag0631 | Cone-Chr3:3113517 | 1.67E-32 | dispersed | |
| Cone3ag0631 | Cone-Chr3:3113517 | Cone3ag1462 | Cone-Chr3:33273405 | 6.52E-27 | dispersed | |
| Cone1ag1687 | Cone-Chr1:57933628 | Cone3ag0631 | Cone-Chr3:3113517 | 8.07E-129 | wgd | |
| Cone10ag0605 | Cone-Chr10:2840936 | Cone3ag0631 | Cone-Chr3:3113517 | 7.57E-190 | wgd | |
| Cone3ag0631 | Cone-Chr3:3113517 | Cone5ag0933 | Cone-Chr5:3992290 | 8.74E-134 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45810 | None | None | None | None | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag0631 | - | - | - | 0.0 |