Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0639 ATGGCGTCGGTGTTGTTATACCATGTGGTGGGAGATCTGACGGTGGGAAAGCCGGAGGTGGTAGAATTGTGCGAAACAGAGTCGGTGGAGACAGCCATTAGAGTGATCGGAGAATCTACAGAAGGTGGGATTCCAATTTGGAAGAGGAAATTTCATCTGGGAATGATCGAAACGAGTGAAATGAGGCAGCAGAGGTTTGTGGGCATTCTCAATTCGTTAGATATTGTAGCTTTCCTGGCAAGAAACGAGTGTTTAGAGGATCAGGATAAGGCCATGAAGACCCCTGTTTCTGAGCTTGTTGTTCCTAACAACTCCTTGTTGAGACAGGTTGATCCTGGAACGAGATTGATAGACGCACTGGAAATGATGAAGCAGGGAGTGAAGCGACTCCTTGTCCGGAAGAGTGTAGGATGGAAAGGAATGAGCAAGCGATTCTCTATTCTCTACAATGGAAAGTGGCTCAAAAACCTTGACAACAACCTCTCCTCCTCCTCTAACACCATCACTACCACCACAAGCAGCAGCAGCAGTAGCAATAACAACCTCCTCCTCGAATCTAACAACCCGACCCGCACTTCCACCTCCTCCACCTCATCATTAGGCCATGACAAGTTCTGTTGCCTCTCAAGAGAAGACGTCATCCGCTTCCTCATTGGCTGTCTCGGAGCCCTGGCCCCACTCCCTCTCTCCACCATAGCCACTCTTGGGATCATCAACCCTAACTACTCCCTCCTTGACGCCTCTTCCCCAGCAATCGAAGTGACTGAGAAACTCCCCCATGACCCTAGTGCTATTGCGATCATCGAAAACACATTCGACGGTCAAAGAAAAATAATCGGAGAAATCTCTTCCTCCAAATTGTGGAAATGCAACTACCTAGCCGCAGCTTGGGCTCTGGCTAATCTTTCTGCTGGCCAGTTTGTTATGGGGGTGGAAGATATCGTTGGGTCGAGATCTCGACCGGAACATCCTGGAAATGAAAATGCGAGCAGCAGCGATAACAACAACAACAACAGCAGCAGCAATTTGTCCAATGGTGGTGGTGTAGGATCCAGGCTGAGGAAGTTTAGTAGTAGGAGCATTGGGTTTAATCCTGCAAACACGGGATTTGGGGTTAGTCGGAGTATGATGTATAGGGGAAGAAGTGCGCCGTTGACTTGTAATGTTACAAGCTCATTGGCTGCTGTGATGGCTCAGATGCTTTCTCATAGAGCCACCCATGTTTGGGTTACCGAGGATGATAGTGATGATGTCTTGGTTGGGGTTGTGAGTTATGCTGAGATTTTAGTCGCTGTGACTAAGCATCCTAGTAGTTTTATTCCGGCAAATAGGTCCATGGAAGGGTTTGGAAAGGATGTCCAAAATTGA 1368 48.03 MASVLLYHVVGDLTVGKPEVVELCETESVETAIRVIGESTEGGIPIWKRKFHLGMIETSEMRQQRFVGILNSLDIVAFLARNECLEDQDKAMKTPVSELVVPNNSLLRQVDPGTRLIDALEMMKQGVKRLLVRKSVGWKGMSKRFSILYNGKWLKNLDNNLSSSSNTITTTTSSSSSSNNNLLLESNNPTRTSTSSTSSLGHDKFCCLSREDVIRFLIGCLGALAPLPLSTIATLGIINPNYSLLDASSPAIEVTEKLPHDPSAIAIIENTFDGQRKIIGEISSSKLWKCNYLAAAWALANLSAGQFVMGVEDIVGSRSRPEHPGNENASSSDNNNNNSSSNLSNGGGVGSRLRKFSSRSIGFNPANTGFGVSRSMMYRGRSAPLTCNVTSSLAAVMAQMLSHRATHVWVTEDDSDDVLVGVVSYAEILVAVTKHPSSFIPANRSMEGFGKDVQN 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3169650 3172501 - Conep03aG0065700.1 Cone3ag0639 434098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0639 455 MobiDBLite consensus disorder prediction 317 352 - -
Cone3ag0639 455 SUPERFAMILY CBS-domain pair 5 135 IPR046342 -
Cone3ag0639 455 Gene3D - 8 140 IPR046342 -
Cone3ag0639 455 Gene3D - 361 438 IPR046342 -
Cone3ag0639 455 MobiDBLite consensus disorder prediction 323 348 - -
Cone3ag0639 455 SUPERFAMILY CBS-domain pair 379 435 IPR046342 -
Cone3ag0639 455 CDD CBS_pair_SF 25 148 - -
Cone3ag0639 455 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 19 435 IPR050511 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Cone3ag0639 455 ProSiteProfiles CBS domain profile. 377 439 IPR000644 -
Cone3ag0639 455 MobiDBLite consensus disorder prediction 165 200 - -
Cone3ag0639 455 Pfam CBS domain 383 432 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0639 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0639 Cone-Chr3:3169650 Cone6ag0134 Cone-Chr6:656735 7.80E-24 dispersed
Cone10ag0612 Cone-Chr10:2904626 Cone3ag0639 Cone-Chr3:3169650 1.37E-270 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g834 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0612 Cone3ag0639 . . . . . . . . . . . . . . . . . . Car05g00708 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004318 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 42