Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0662 ATGGTCCTGCTCCACCTCCACTTCATCCGCCTCCTTTCCTGCCTCCACCTCCACAAGGTCTTGTATGTCAAATTTTGGAGAAAGGTAGTTCATTGCCGGAATCTAGTTGTCGTGAAAGTTTGTTCGGACAGTAGAAAATCAAGATACATCCGCTTTATCAGATCTTGTACAAATTTTAGTGTTTCAAGGTCCAAATCTTCAACTCTCATCTCTTATCAATCACAGAAGACACCTTCATATTGCACTAGTACAAGTAAACCTCAGGCGAAGGAATTTTTCTACTTTTTGATAGAATGGAGCCAGTTGCACTTGATCAAAATAGTAGCAATATTGGCTTGCACTTTCATGGTGATTCCTTCTGCCCAAGCAGTAGATGCCCTCAAAACTTGTACTTGTTTGCTCAAGGAATGCCGGATAGAACTTGCTAAATGTATTGCAAATCCACTCTGTGCCGCTAACGTTGCCTGCCTCCAAACCTGCAATAATCGACCTGATGAAACCGAATGCCAGATTAAATGTGGGGACTTGTTCGAAAACAGCGTGGTGGATGAATTCAACGAATGCGCCGTATCTCGAAAGAAATGCGTGCCTAAGAAATCCGATCTGGGTGAATTTCCGGCCCCAGATCCGGCCGTTCTTGTTAAAAGCTTTAACATTGCAGATTTTAACGGGAAATGGTATATCACTAGAGGTCTGAATCCGACATTTGACGCGTTTGATTGTCAATTGCACGAGTTTCATGTGGAGGGCGATAAACTTTTCGGGAATATAACATGGAGAATAAAAACTCCGGATACTGGTTTTTTTACTAGATCTGCTGTGCAAAGATTTGTACAGGATCCAGCCCAACCCGGAATACTTTACAATCACGATAATGAGTATCTTCACTATCAAGATGACTGGTATATATTGTCAAGCAAGTTGGAGAACAAACCAGACGACTACATTTTCGTGTACTATAGAGGCAGAAATGATGCATGGGATGGTTATGGTGGTGCCGTAGTGTACACGAGAAGTGCAGTTTTGCCCGAAAGCATTGTTCCAGATCTCGAAAAAGCAGCAAAGAGCATAGGGAGAGACTTCAGTACGTTCATAAAAACGGATAATACATGTGGGCCCGAGCCACCCATTGTAGAGAGGTTGGAGAAGGCATTGGAGAAAGGGGAGAAGACAATTGTTAGGGAAGTTGAAGAGATAGAAGAAGAGGTAGAGAAGGTAGGGAAGACAGAGAGTACTCTGTTTCAGAGATTGGCTGAAGGGTTTCAAGAGCTTACAAGAGACGAGGAGAATTTCATAAGAGAATTGTCTAAAGAAGAGATGGACCTTTTGGATCAGCTCAAAATGGAAGCTACTGAGTTAGAAAATTTGTTTGGTAAAGCACCTGCTCTTAGAAAGTTGAGATAG 1404 42.45 MVLLHLHFIRLLSCLHLHKVLYVKFWRKVVHCRNLVVVKVCSDSRKSRYIRFIRSCTNFSVSRSKSSTLISYQSQKTPSYCTSTSKPQAKEFFYFLIEWSQLHLIKIVAILACTFMVIPSAQAVDALKTCTCLLKECRIELAKCIANPLCAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPKKSDLGEFPAPDPAVLVKSFNIADFNGKWYITRGLNPTFDAFDCQLHEFHVEGDKLFGNITWRIKTPDTGFFTRSAVQRFVQDPAQPGILYNHDNEYLHYQDDWYILSSKLENKPDDYIFVYYRGRNDAWDGYGGAVVYTRSAVLPESIVPDLEKAAKSIGRDFSTFIKTDNTCGPEPPIVERLEKALEKGEKTIVREVEEIEEEVEKVGKTESTLFQRLAEGFQELTRDEENFIRELSKEEMDLLDQLKMEATELENLFGKAPALRKLR 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3326538 3329787 - Conep03aG0068000.1 Cone3ag0662 434121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0662 467 Coils Coil 436 456 - -
Cone3ag0662 467 CDD lipocalin_VDE 201 376 - -
Cone3ag0662 467 PANTHER VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC-RELATED 32 455 IPR044682 GO:0009507(PANTHER)|GO:0010028(InterPro)|GO:0010028(PANTHER)|GO:0015994(PANTHER)|GO:0016491(PANTHER)|GO:0046422(PANTHER)|GO:0046422(InterPro)
Cone3ag0662 467 SUPERFAMILY Lipocalins 206 376 IPR012674 -
Cone3ag0662 467 ProSitePatterns Lipocalin signature. 218 229 IPR022272 -
Cone3ag0662 467 Gene3D - 200 382 IPR012674 -
Cone3ag0662 467 Coils Coil 378 398 - -
Cone3ag0662 467 Pfam VDE lipocalin domain 130 369 IPR010788 GO:0046422(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0662 K09839 - - vvi:100257865 658.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0623 Cone-Chr10:2970442 Cone3ag0662 Cone-Chr3:3326538 3.86E-301 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0623 Cone3ag0662 . . . Cme05g01092 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010776 0 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 31