Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0673 ATGGGAACTGAACTTTTGAGAGTTTGTGTTAAAGAAGAGAATGACGATTTTCCATCAGCTCCACCTGGGTTCGAGTCATATTCTTCATCCTTAACTCCAATAAAGGTCGAAGAATATAGTGAGAAACGAGACAGTGAAAACTTGATTAGTTCCGTAGCATCCACAAGCACTTCCAAAACACAATCAGTTCATGTGGAATCTGATGTGTTGAAGGTTACAAGGTCTCTTCGTCGTAGGATAAAGTATGAAAGATATAACAACTGCTCGGATGAGGACTGTGATTCTGACCTGCCTGGTCAAAATTTCTCTTCAAGGTCACTTCTTCCGAAGGGGGTAATTCGTGGTTGTGCAGACTGTAGTGATTGCCAGAAGGTCACTGCAAGATGGCGACCAGAAGAATCTCATAGGCCAGATCTCGAGGATGCTCCTGTCTTCTACCCTACCGAAGAGGAGTTTGAAGATACTTTGGGCTATATAGCAAGTATACGCCCCAAAGCAGAACCATATGGGATCTGTCGTATTGTACCTCCCCCTTCTTGGAAACCACCTTGTCCTCTCAAGGAAAAAACAACATGGGAATCTTCCAAATTTGCTACCCGTGTTCAAAGAATCGATAAACTTCAGAATCGAGGTTCAGTGAGAACGATGTCAAGGCTTCATAGTCAAATGAGGAAGAAAAGGAGAAGAGGCAGCCGTATGGGCCCTGATTCAACTAGTGATAATGTAGGAATTGGAGATGGCGGAGCTTCCTCTGAGGCTGAGATATTTGGGTTTGAACCCGGTCCACCATTTACTCTAGAAATTTTTGAGAAATATGCTGATGACTTCAAAGCTCAATATTTTCTTAAAGCAGAGACTGATACTGTTAAAGAGCGGTGTGAACCGTCTATAGATAATATTGAAGGTGAATACTGGAGAATGGTAGAGAAACCTACCGAAGAAATTGAGGTACTGTATGGGGCGGATCTAGAAACTGGGAGTTTTGGTAGTGGGTTTCCAAAAGTTTGCTGTCAAGACGGTTCAGCATCTGATGAAAGATATGTGAAATCTGGATGGAACTTAAACAACTTTCCGAGGCTTCCTGGATCTGTTCTATCTTATGAAAGCAGTGAGATATCTGGTGTTTTGGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCCTTTTGTTGGCACGTTGAAGATCACCACCTATACTCATTAAATTACATGCATTGGGGTGCTCCAAAAATCTGGTACGGTGTTGCAGAGAAGGATGCCCATAGATTAGAGGAGGCTATGAGAAAGCATTTACCTGACCTTTTTGAAGAACAGCCAGACTTACTTCATAAATTGGTGACACAGCTGTCCCCCTCCATACTGAAATCCGAGGGGGTGCCTGTTTATAGATGCACTCAAAATCCCGGAGAGTTTGTTCTCACCTTCCCTCGAGCATACCATTCAGGATTCAACTCTGGTTTCAATTGTGCTGAGGCGGTTAATGTAGCTCCTGTAGACTGGTTTCCACATGGGCAAATTGCTATTGAGTTGTACCGGGAGCAAAGAAGGAGGACTTCAATTTCCCATGATAAACTCTTGCTTGGGGCCGCCAGAGAAGCGGTTAGAGCGCAGTGGGAACTTAATTTATTGAGAAAGAATACTGCAGATAACTTAAGATGGAGAGGCGTATGTGGAAAAGATGGGATCCTTGCAAAAACATTCAAGACACGTGTTGACATGGAGCGAGCAAGGAGGAATCTTCCTGTCGGTATTTCACAGGCAAAGAAGATGGAGAACAATTTTGACACTACCAATGAGAGGGAATGCTCTTTATGCCTCTTTGACCTACACCTCTCTGCAGTTGGATGTCGTTGTTCCCCAGATAGATATGTGTGCTTGAATCATGCAAAACAGTTGTGTTCTTGTGCATGGGGGACTAGATTTTTTCTCTTCCGTTATGACATCAATGAATTAAACATCCTGGTCGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCTAGACTGGATCTTGGGTTAGCACTCAGTTCTTACATCTCCAAAGAAAGGATCCAATTTAGTAGATCAATGCTTTGTTCTGAAGAACAATCGTTCAAGGATCCGAAAACACAAGTATTGTTTAATTCCCTTAAAGATTCCCACTTGGTGGGACCCTTACAAAGTCCAACTATGACTGCTGGTGATCTCTCTTCTCAACAGAACAATAAGCAGGCAGAGGACAGTATTGTGGCTTCCAATTTGAAATCCTCTGTTTGCCAATTGTCTCAGGAAGATACTTCGTATTGTGAAAGTTCAGTTGCCGAGAAAAATAGAGTAGATAAGGCTTCAGTTTTGGAACAAGATGTGATACTTTTAAGCGATGATGAAAGTGATGAGCCTAAAAGGCAGCAAGTCTTAGATCAAGAAAAAGAAAGTTCCTTAGAAAATAGTATAAAAAAGTCAGTAGGGTTGCCATATTCTGGCTGTACGGTGAGCACCTGCAATAATGATAAAGATGCAGTCTTGGCCCTACCAGTGATCAATGTGGCTGTAAAGGTTGAAAAGGACATTATTAGCTCATCATCCAATAAAAAAGGGAGTAAATGTCTATTACCACAGGCTGTACCAATAAAAGAGGATCCTTCTGAAGATCATACAGCGGTTTTAAAAACTAGTGAATCAAATTCTACTGATCTTACTGTCTCGGAATCGTCATGTAAGAATAGTTCAATATTTTCAACTCCAAGGGATGGAAATAGCAAGCAAGTACAGATTAGTAGCAGTGAAAACCCGAGCAATGAGACTAAGCTTGAAGACAGGGAAGTAAATACCTCCTCAAATTTGTCGGACAATATAAAACCCATATCTTGTGCTCAAAAGAGTTTAGATCGACATGTGAGACAAAAGGGTCCCCGGATAGCAAAGGTAGTTCGGAGGATCAACTGTAATGTGGAGCCTCTGGAATTTGGAATTGTGGTTTCAGGACACTCTTGGTCTAACAGTCGGGCCATTTTCCCCAAAGGATTTAAGAGTCGTGTTAGGTACATAAGCGTCTTAGATCCATCGAACATGTGTTACTATATCTCAGATATTCTGGATGCTGGACGAGATGGACCACTTTTCATGGTTTCTTTGGAACACTGTCCAGGCGAGGTGTTCATTCACGTTTCTGCTGCCAGATGCTGGGAATTGGTAAGAGAGAGAGTGAATCAAGAGATAACAAGGCAACATAAATTGGGTAAAGCCAACCTCCCTCCTCTGCAGCCTCCTGGTAGTTTGGATGCATTTGAAATGTTTGGATTTACTTCACCAGCAATCGTGCAGGCTATTGAAGCAATGGATCAAAACCGAATATGTACTGAATATTGGGACTCTAGGCCATATTCAAGGCCTCAAGTACGGATTCCACAACCTTCTCATCAATCAACGGACAGTAATCTAAACTTCCATACAATGGCAAGAGAGAGAAATGATACTGGAACGCCCGAAGATAATCTCTTGCCGGCTGGGGTCCACAAAATACTCGGAGGTTTATTTAAGAAGTCAAACCGAGAAGAATTACAGGCACTGTATAGCATTCTAAGATATGATAATAGATCAGCATCTGATCAAGGGTCGTTAATCCGGCTTCTTAATGAAGAGATTCAAGAGCGTCCTAGATGA 3648 42.19 MGTELLRVCVKEENDDFPSAPPGFESYSSSLTPIKVEEYSEKRDSENLISSVASTSTSKTQSVHVESDVLKVTRSLRRRIKYERYNNCSDEDCDSDLPGQNFSSRSLLPKGVIRGCADCSDCQKVTARWRPEESHRPDLEDAPVFYPTEEEFEDTLGYIASIRPKAEPYGICRIVPPPSWKPPCPLKEKTTWESSKFATRVQRIDKLQNRGSVRTMSRLHSQMRKKRRRGSRMGPDSTSDNVGIGDGGASSEAEIFGFEPGPPFTLEIFEKYADDFKAQYFLKAETDTVKERCEPSIDNIEGEYWRMVEKPTEEIEVLYGADLETGSFGSGFPKVCCQDGSASDERYVKSGWNLNNFPRLPGSVLSYESSEISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVAEKDAHRLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCTQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWFPHGQIAIELYREQRRRTSISHDKLLLGAAREAVRAQWELNLLRKNTADNLRWRGVCGKDGILAKTFKTRVDMERARRNLPVGISQAKKMENNFDTTNERECSLCLFDLHLSAVGCRCSPDRYVCLNHAKQLCSCAWGTRFFLFRYDINELNILVEALEGKLSAVYRWARLDLGLALSSYISKERIQFSRSMLCSEEQSFKDPKTQVLFNSLKDSHLVGPLQSPTMTAGDLSSQQNNKQAEDSIVASNLKSSVCQLSQEDTSYCESSVAEKNRVDKASVLEQDVILLSDDESDEPKRQQVLDQEKESSLENSIKKSVGLPYSGCTVSTCNNDKDAVLALPVINVAVKVEKDIISSSSNKKGSKCLLPQAVPIKEDPSEDHTAVLKTSESNSTDLTVSESSCKNSSIFSTPRDGNSKQVQISSSENPSNETKLEDREVNTSSNLSDNIKPISCAQKSLDRHVRQKGPRIAKVVRRINCNVEPLEFGIVVSGHSWSNSRAIFPKGFKSRVRYISVLDPSNMCYYISDILDAGRDGPLFMVSLEHCPGEVFIHVSAARCWELVRERVNQEITRQHKLGKANLPPLQPPGSLDAFEMFGFTSPAIVQAIEAMDQNRICTEYWDSRPYSRPQVRIPQPSHQSTDSNLNFHTMARERNDTGTPEDNLLPAGVHKILGGLFKKSNREELQALYSILRYDNRSASDQGSLIRLLNEEIQERPR 1215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3426695 3434267 + Conep03aG0069100.1 Cone3ag0673 434132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0673 1215 MobiDBLite consensus disorder prediction 786 809 - -
Cone3ag0673 1215 SMART JmjN_1 141 182 IPR003349 -
Cone3ag0673 1215 MobiDBLite consensus disorder prediction 903 943 - -
Cone3ag0673 1215 Pfam C5HC2 zinc finger 602 653 IPR004198 -
Cone3ag0673 1215 Pfam F/Y rich C-terminus 1033 1117 IPR003889 GO:0005634(InterPro)
Cone3ag0673 1215 MobiDBLite consensus disorder prediction 789 809 - -
Cone3ag0673 1215 ProSiteProfiles FYR domain FYRN motif profile. 971 1029 IPR003888 GO:0005634(InterPro)
Cone3ag0673 1215 FunFam Putative lysine-specific demethylase JMJ16 977 1115 - -
Cone3ag0673 1215 Pfam jmjN domain 143 176 IPR003349 -
Cone3ag0673 1215 Gene3D Cupin 127 496 - -
Cone3ag0673 1215 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Cone3ag0673 1215 PANTHER LYSINE-SPECIFIC DEMETHYLASE 128 942 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cone3ag0673 1215 SMART fyrc_3 1035 1129 IPR003889 GO:0005634(InterPro)
Cone3ag0673 1215 Pfam JmjC domain, hydroxylase 379 495 IPR003347 -
Cone3ag0673 1215 SMART fyrn_3 985 1029 IPR003888 GO:0005634(InterPro)
Cone3ag0673 1215 SMART cupin_9 346 512 IPR003347 -
Cone3ag0673 1215 MobiDBLite consensus disorder prediction 903 927 - -
Cone3ag0673 1215 Gene3D - 978 1115 - -
Cone3ag0673 1215 ProSiteProfiles FYR domain FYRC motif profile. 1031 1121 IPR003889 GO:0005634(InterPro)
Cone3ag0673 1215 MobiDBLite consensus disorder prediction 217 245 - -
Cone3ag0673 1215 Pfam F/Y-rich N-terminus 982 1028 IPR003888 GO:0005634(InterPro)
Cone3ag0673 1215 SUPERFAMILY Clavaminate synthase-like 347 539 - -
Cone3ag0673 1215 ProSiteProfiles JmjC domain profile. 346 512 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0673 K11446 - - cit:102609905 1444.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0310 Cone-Chr12:1695534 Cone3ag0673 Cone-Chr3:3426695 9.11E-101 dispersed
Cone3ag0673 Cone-Chr3:3426695 Cone8ag0309 Cone-Chr8:1785361 4.59E-100 dispersed
Cone6ag1120 Cone-Chr6:7877660 Cone3ag0673 Cone-Chr3:3426695 4.61E-264 transposed
Cone9ag1086 Cone-Chr9:6282421 Cone3ag0673 Cone-Chr3:3426695 9.43E-268 transposed
Cone10ag0643 Cone-Chr10:3087132 Cone3ag0673 Cone-Chr3:3426695 0 wgd
Cone17ag0624 Cone-Chr17:3515368 Cone3ag0673 Cone-Chr3:3426695 1.94E-223 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g610 Blo10g00272 Blo11g00440 . . . Bpe09g00662 Bma13g00412 . . . . Cma12g00959 . Car12g00919 . Cpe07g00798 . . . . . . . . . . . . . . . Cone10ag0643 Cone3ag0673 . . . Csa02g00757 . Cme05g01133 . . . . . . . . . Cmo05g00802 Cmo12g00962 . . . . . . Bhi06g01091 . . . . . . Cla11g01036 Cam11g1090 . Cco11g1094 Clacu11g1252 Cmu11g1088 Cre11g1512 . . Chy05g00772 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag0673 . 1 1213 JUMONJI Transcription Factor Family AT1G08620 54.5 0.0e+00 1268.1
Cone10ag0643 . 1 1215 JUMONJI Transcription Factor Family AT1G08620 54.3 0.0e+00 1258.4
Cone9ag1086 . 27 929 JUMONJI Transcription Factor Family AT1G30810 52.6 6.3e-257 884.4
Cone6ag1120 . 32 924 JUMONJI Transcription Factor Family AT1G30810 52.5 5.9e-255 877.9
Cone6ag1120 . 63 892 JUMONJI Transcription Factor Family AT4G20400 52.8 1.1e-249 860.5
Cone9ag1086 . 65 895 JUMONJI Transcription Factor Family AT4G20400 52.6 5.8e-248 854.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45813 PF00175 NAD_binding_1 3.70E-29 CL0091 Cone TR