Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0673 ATGGGAACTGAACTTTTGAGAGTTTGTGTTAAAGAAGAGAATGACGATTTTCCATCAGCTCCACCTGGGTTCGAGTCATATTCTTCATCCTTAACTCCAATAAAGGTCGAAGAATATAGTGAGAAACGAGACAGTGAAAACTTGATTAGTTCCGTAGCATCCACAAGCACTTCCAAAACACAATCAGTTCATGTGGAATCTGATGTGTTGAAGGTTACAAGGTCTCTTCGTCGTAGGATAAAGTATGAAAGATATAACAACTGCTCGGATGAGGACTGTGATTCTGACCTGCCTGGTCAAAATTTCTCTTCAAGGTCACTTCTTCCGAAGGGGGTAATTCGTGGTTGTGCAGACTGTAGTGATTGCCAGAAGGTCACTGCAAGATGGCGACCAGAAGAATCTCATAGGCCAGATCTCGAGGATGCTCCTGTCTTCTACCCTACCGAAGAGGAGTTTGAAGATACTTTGGGCTATATAGCAAGTATACGCCCCAAAGCAGAACCATATGGGATCTGTCGTATTGTACCTCCCCCTTCTTGGAAACCACCTTGTCCTCTCAAGGAAAAAACAACATGGGAATCTTCCAAATTTGCTACCCGTGTTCAAAGAATCGATAAACTTCAGAATCGAGGTTCAGTGAGAACGATGTCAAGGCTTCATAGTCAAATGAGGAAGAAAAGGAGAAGAGGCAGCCGTATGGGCCCTGATTCAACTAGTGATAATGTAGGAATTGGAGATGGCGGAGCTTCCTCTGAGGCTGAGATATTTGGGTTTGAACCCGGTCCACCATTTACTCTAGAAATTTTTGAGAAATATGCTGATGACTTCAAAGCTCAATATTTTCTTAAAGCAGAGACTGATACTGTTAAAGAGCGGTGTGAACCGTCTATAGATAATATTGAAGGTGAATACTGGAGAATGGTAGAGAAACCTACCGAAGAAATTGAGGTACTGTATGGGGCGGATCTAGAAACTGGGAGTTTTGGTAGTGGGTTTCCAAAAGTTTGCTGTCAAGACGGTTCAGCATCTGATGAAAGATATGTGAAATCTGGATGGAACTTAAACAACTTTCCGAGGCTTCCTGGATCTGTTCTATCTTATGAAAGCAGTGAGATATCTGGTGTTTTGGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCCTTTTGTTGGCACGTTGAAGATCACCACCTATACTCATTAAATTACATGCATTGGGGTGCTCCAAAAATCTGGTACGGTGTTGCAGAGAAGGATGCCCATAGATTAGAGGAGGCTATGAGAAAGCATTTACCTGACCTTTTTGAAGAACAGCCAGACTTACTTCATAAATTGGTGACACAGCTGTCCCCCTCCATACTGAAATCCGAGGGGGTGCCTGTTTATAGATGCACTCAAAATCCCGGAGAGTTTGTTCTCACCTTCCCTCGAGCATACCATTCAGGATTCAACTCTGGTTTCAATTGTGCTGAGGCGGTTAATGTAGCTCCTGTAGACTGGTTTCCACATGGGCAAATTGCTATTGAGTTGTACCGGGAGCAAAGAAGGAGGACTTCAATTTCCCATGATAAACTCTTGCTTGGGGCCGCCAGAGAAGCGGTTAGAGCGCAGTGGGAACTTAATTTATTGAGAAAGAATACTGCAGATAACTTAAGATGGAGAGGCGTATGTGGAAAAGATGGGATCCTTGCAAAAACATTCAAGACACGTGTTGACATGGAGCGAGCAAGGAGGAATCTTCCTGTCGGTATTTCACAGGCAAAGAAGATGGAGAACAATTTTGACACTACCAATGAGAGGGAATGCTCTTTATGCCTCTTTGACCTACACCTCTCTGCAGTTGGATGTCGTTGTTCCCCAGATAGATATGTGTGCTTGAATCATGCAAAACAGTTGTGTTCTTGTGCATGGGGGACTAGATTTTTTCTCTTCCGTTATGACATCAATGAATTAAACATCCTGGTCGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCTAGACTGGATCTTGGGTTAGCACTCAGTTCTTACATCTCCAAAGAAAGGATCCAATTTAGTAGATCAATGCTTTGTTCTGAAGAACAATCGTTCAAGGATCCGAAAACACAAGTATTGTTTAATTCCCTTAAAGATTCCCACTTGGTGGGACCCTTACAAAGTCCAACTATGACTGCTGGTGATCTCTCTTCTCAACAGAACAATAAGCAGGCAGAGGACAGTATTGTGGCTTCCAATTTGAAATCCTCTGTTTGCCAATTGTCTCAGGAAGATACTTCGTATTGTGAAAGTTCAGTTGCCGAGAAAAATAGAGTAGATAAGGCTTCAGTTTTGGAACAAGATGTGATACTTTTAAGCGATGATGAAAGTGATGAGCCTAAAAGGCAGCAAGTCTTAGATCAAGAAAAAGAAAGTTCCTTAGAAAATAGTATAAAAAAGTCAGTAGGGTTGCCATATTCTGGCTGTACGGTGAGCACCTGCAATAATGATAAAGATGCAGTCTTGGCCCTACCAGTGATCAATGTGGCTGTAAAGGTTGAAAAGGACATTATTAGCTCATCATCCAATAAAAAAGGGAGTAAATGTCTATTACCACAGGCTGTACCAATAAAAGAGGATCCTTCTGAAGATCATACAGCGGTTTTAAAAACTAGTGAATCAAATTCTACTGATCTTACTGTCTCGGAATCGTCATGTAAGAATAGTTCAATATTTTCAACTCCAAGGGATGGAAATAGCAAGCAAGTACAGATTAGTAGCAGTGAAAACCCGAGCAATGAGACTAAGCTTGAAGACAGGGAAGTAAATACCTCCTCAAATTTGTCGGACAATATAAAACCCATATCTTGTGCTCAAAAGAGTTTAGATCGACATGTGAGACAAAAGGGTCCCCGGATAGCAAAGGTAGTTCGGAGGATCAACTGTAATGTGGAGCCTCTGGAATTTGGAATTGTGGTTTCAGGACACTCTTGGTCTAACAGTCGGGCCATTTTCCCCAAAGGATTTAAGAGTCGTGTTAGGTACATAAGCGTCTTAGATCCATCGAACATGTGTTACTATATCTCAGATATTCTGGATGCTGGACGAGATGGACCACTTTTCATGGTTTCTTTGGAACACTGTCCAGGCGAGGTGTTCATTCACGTTTCTGCTGCCAGATGCTGGGAATTGGTAAGAGAGAGAGTGAATCAAGAGATAACAAGGCAACATAAATTGGGTAAAGCCAACCTCCCTCCTCTGCAGCCTCCTGGTAGTTTGGATGCATTTGAAATGTTTGGATTTACTTCACCAGCAATCGTGCAGGCTATTGAAGCAATGGATCAAAACCGAATATGTACTGAATATTGGGACTCTAGGCCATATTCAAGGCCTCAAGTACGGATTCCACAACCTTCTCATCAATCAACGGACAGTAATCTAAACTTCCATACAATGGCAAGAGAGAGAAATGATACTGGAACGCCCGAAGATAATCTCTTGCCGGCTGGGGTCCACAAAATACTCGGAGGTTTATTTAAGAAGTCAAACCGAGAAGAATTACAGGCACTGTATAGCATTCTAAGATATGATAATAGATCAGCATCTGATCAAGGGTCGTTAATCCGGCTTCTTAATGAAGAGATTCAAGAGCGTCCTAGATGA 3648 42.19 MGTELLRVCVKEENDDFPSAPPGFESYSSSLTPIKVEEYSEKRDSENLISSVASTSTSKTQSVHVESDVLKVTRSLRRRIKYERYNNCSDEDCDSDLPGQNFSSRSLLPKGVIRGCADCSDCQKVTARWRPEESHRPDLEDAPVFYPTEEEFEDTLGYIASIRPKAEPYGICRIVPPPSWKPPCPLKEKTTWESSKFATRVQRIDKLQNRGSVRTMSRLHSQMRKKRRRGSRMGPDSTSDNVGIGDGGASSEAEIFGFEPGPPFTLEIFEKYADDFKAQYFLKAETDTVKERCEPSIDNIEGEYWRMVEKPTEEIEVLYGADLETGSFGSGFPKVCCQDGSASDERYVKSGWNLNNFPRLPGSVLSYESSEISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVAEKDAHRLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCTQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWFPHGQIAIELYREQRRRTSISHDKLLLGAAREAVRAQWELNLLRKNTADNLRWRGVCGKDGILAKTFKTRVDMERARRNLPVGISQAKKMENNFDTTNERECSLCLFDLHLSAVGCRCSPDRYVCLNHAKQLCSCAWGTRFFLFRYDINELNILVEALEGKLSAVYRWARLDLGLALSSYISKERIQFSRSMLCSEEQSFKDPKTQVLFNSLKDSHLVGPLQSPTMTAGDLSSQQNNKQAEDSIVASNLKSSVCQLSQEDTSYCESSVAEKNRVDKASVLEQDVILLSDDESDEPKRQQVLDQEKESSLENSIKKSVGLPYSGCTVSTCNNDKDAVLALPVINVAVKVEKDIISSSSNKKGSKCLLPQAVPIKEDPSEDHTAVLKTSESNSTDLTVSESSCKNSSIFSTPRDGNSKQVQISSSENPSNETKLEDREVNTSSNLSDNIKPISCAQKSLDRHVRQKGPRIAKVVRRINCNVEPLEFGIVVSGHSWSNSRAIFPKGFKSRVRYISVLDPSNMCYYISDILDAGRDGPLFMVSLEHCPGEVFIHVSAARCWELVRERVNQEITRQHKLGKANLPPLQPPGSLDAFEMFGFTSPAIVQAIEAMDQNRICTEYWDSRPYSRPQVRIPQPSHQSTDSNLNFHTMARERNDTGTPEDNLLPAGVHKILGGLFKKSNREELQALYSILRYDNRSASDQGSLIRLLNEEIQERPR 1215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3426695 3434267 + Conep03aG0069100.1 Cone3ag0673 434132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0673 1215 MobiDBLite consensus disorder prediction 786 809 - -
Cone3ag0673 1215 SMART JmjN_1 141 182 IPR003349 -
Cone3ag0673 1215 MobiDBLite consensus disorder prediction 903 943 - -
Cone3ag0673 1215 Pfam C5HC2 zinc finger 602 653 IPR004198 -
Cone3ag0673 1215 Pfam F/Y rich C-terminus 1033 1117 IPR003889 GO:0005634(InterPro)
Cone3ag0673 1215 MobiDBLite consensus disorder prediction 789 809 - -
Cone3ag0673 1215 ProSiteProfiles FYR domain FYRN motif profile. 971 1029 IPR003888 GO:0005634(InterPro)
Cone3ag0673 1215 FunFam Putative lysine-specific demethylase JMJ16 977 1115 - -
Cone3ag0673 1215 Pfam jmjN domain 143 176 IPR003349 -
Cone3ag0673 1215 Gene3D Cupin 127 496 - -
Cone3ag0673 1215 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Cone3ag0673 1215 PANTHER LYSINE-SPECIFIC DEMETHYLASE 128 942 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cone3ag0673 1215 SMART fyrc_3 1035 1129 IPR003889 GO:0005634(InterPro)
Cone3ag0673 1215 Pfam JmjC domain, hydroxylase 379 495 IPR003347 -
Cone3ag0673 1215 SMART fyrn_3 985 1029 IPR003888 GO:0005634(InterPro)
Cone3ag0673 1215 SMART cupin_9 346 512 IPR003347 -
Cone3ag0673 1215 MobiDBLite consensus disorder prediction 903 927 - -
Cone3ag0673 1215 Gene3D - 978 1115 - -
Cone3ag0673 1215 ProSiteProfiles FYR domain FYRC motif profile. 1031 1121 IPR003889 GO:0005634(InterPro)
Cone3ag0673 1215 MobiDBLite consensus disorder prediction 217 245 - -
Cone3ag0673 1215 Pfam F/Y-rich N-terminus 982 1028 IPR003888 GO:0005634(InterPro)
Cone3ag0673 1215 SUPERFAMILY Clavaminate synthase-like 347 539 - -
Cone3ag0673 1215 ProSiteProfiles JmjC domain profile. 346 512 IPR003347 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0310 Cone-Chr12:1695534 Cone3ag0673 Cone-Chr3:3426695 9.11E-101 dispersed
Cone3ag0673 Cone-Chr3:3426695 Cone8ag0309 Cone-Chr8:1785361 4.59E-100 dispersed
Cone6ag1120 Cone-Chr6:7877660 Cone3ag0673 Cone-Chr3:3426695 4.61E-264 transposed
Cone9ag1086 Cone-Chr9:6282421 Cone3ag0673 Cone-Chr3:3426695 9.43E-268 transposed
Cone10ag0643 Cone-Chr10:3087132 Cone3ag0673 Cone-Chr3:3426695 0 wgd
Cone17ag0624 Cone-Chr17:3515368 Cone3ag0673 Cone-Chr3:3426695 1.94E-223 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45813 PF00175 NAD_binding_1 3.70E-29 CL0091 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0673 K11446 - cit:102609905 1444.87