Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0678 ATGGAACCCAATGATAACCAACTGAGTTCGTACTATCACCCTCAGCCCACCCACCCCCATCACCACCACCACCACCACCAGAATCCGGTCGCATCTCCGAACAATGGGATTTTTCCTAACACCCATCAAATGTCAGCCGCCCCCACCAACTCTGCTCCAGAGGGTGGTGGTGGAGGACCCCACATGGTGTTCCCTCACTCCGTGCCTTCGGCGGCGGTTTCTTCATCGCCGTTAGAGCCTGCGGCCAGGAGGAAGAGAGGAAGACCTAGAAAGTATGGAACCCCAGAACAAGCTTTGGCTGCTAAGAAAGCTGCTACGGCGTCGTCTCATAACTCTTCTTCTTCTAGGGACAAGAAGGACGATGGCTCCCTTCGTGCTCCCTCTGCTTCTCCTTCCTTATCTGGCTCCTCTAAGAAATCCCACTTCGTCGATTCATGTAATGGTGGTCAAGGCTTTACAGTACATGTTATTGATGTGGCAGCTGGTGAGGATGTGGGCCAGAAAATTATGTTGTTCATGCAACAAAGTAAGCGGGAAATATGTATTCTATCGGCATCTGGGTCTATCTCTAATGCATCTCTTAGACAGCCTGCAACATCAGGGGGTAATATCACATATGAGGGTCGTTTCGAGATTGTATCGCTTTGTGGATCTTATATACGTACTGAGATGGGAGGAAGGACAGGTGGGCTCAGTGTATGTCTGTCTAGTACTGATGGCCAGATCATTGGAGGTGGAGTTGGTGGGCCCCTAAAGGCTGCAGGCCCTGTACAGATTATTGTGGGCACATTTCTAATCGATGCCAAGGAAGCTAGAGTCGGTGTAAAAGGTGATGCTTCTACCAGAAAGTTGCCATCGCCTATTGGTGGTTCTGCACTACCGAACGTAGTCTATCGGTCAGCAGTAGATTCTTCCGGAAGGAATCCCACAAGTAGGGGAAACGATGATTTTCAAGGTATTGGAGGGAGTCATTTCATGCTTCAACCCCATGGGGTCCATTTGGCAGGCCCACACACCACAGATTGGAGAAATGACCTGGATGCTAGAAATACTACTCCCGGTTATGAATTGACAGCAAAAGGAGGTCGTATAATGCATCAATCTCCGGAAAATGGGGACTATGATCAGATTCAGGATTAG 1140 49.39 MEPNDNQLSSYYHPQPTHPHHHHHHHQNPVASPNNGIFPNTHQMSAAPTNSAPEGGGGGPHMVFPHSVPSAAVSSSPLEPAARRKRGRPRKYGTPEQALAAKKAATASSHNSSSSRDKKDDGSLRAPSASPSLSGSSKKSHFVDSCNGGQGFTVHVIDVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLCGSYIRTEMGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQIIVGTFLIDAKEARVGVKGDASTRKLPSPIGGSALPNVVYRSAVDSSGRNPTSRGNDDFQGIGGSHFMLQPHGVHLAGPHTTDWRNDLDARNTTPGYELTAKGGRIMHQSPENGDYDQIQD 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3456206 3461159 + Conep03aG0069600.1 Cone3ag0678 434137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0678 379 MobiDBLite consensus disorder prediction 29 50 - -
Cone3ag0678 379 SUPERFAMILY AF0104/ALDC/Ptd012-like 150 265 - -
Cone3ag0678 379 Gene3D - 153 279 - -
Cone3ag0678 379 ProSiteProfiles PPC domain profile profile. 148 285 IPR005175 -
Cone3ag0678 379 MobiDBLite consensus disorder prediction 127 141 - -
Cone3ag0678 379 MobiDBLite consensus disorder prediction 1 141 - -
Cone3ag0678 379 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 287 IPR039605 GO:0003680(InterPro)
Cone3ag0678 379 CDD DUF296 153 264 IPR005175 -
Cone3ag0678 379 MobiDBLite consensus disorder prediction 302 322 - -
Cone3ag0678 379 MobiDBLite consensus disorder prediction 360 379 - -
Cone3ag0678 379 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 264 IPR005175 -
Cone3ag0678 379 MobiDBLite consensus disorder prediction 302 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0678 Cone-Chr3:3456206 Cone6ag0720 Cone-Chr6:3625087 2.38E-39 dispersed
Cone10ag0649 Cone-Chr10:3122384 Cone3ag0678 Cone-Chr3:3456206 5.87E-219 wgd
Cone3ag0678 Cone-Chr3:3456206 Cone5ag0555 Cone-Chr5:2375683 1.94E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0678 - - - 0.0