Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0681 ATGGCGAATCGGTGGTGGACAGGCGGCCAATTGGGTCTACCAGCTGGAGTTGATCATCATACCTCCAGCTCATCCCCTTTGAGAAAACCAGATCTAGGGATCTCGATCAATAACATCCATGGCGGAGTCGGACACAGCGGTGGCGGTAGCGGTGGTGGTGACGACGAAGAAGACAGAGAAAATAGTGATGAGCCAAAAGAAGGAGCCATTGAAGTAGCCACTAGACGGTCTAGAGGCCGTCCTCCAGGCTCAAAAAACAAACCAAAACCACCAATCTTTGTCACTAGGGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATAACCAACGGAACAGATGTGGCTGAAAGCGTGGCCCAGTTCGCCCGGAGGAGACAGCGTGGTGTCTGTGTCCTCAGTGGTAGCGGCACCGTCACCAACGTCACCCTCAGACAACCGTCAGCTCCCGGTGCAGTTTTAGGGCTTCAAGGCCGGTTCGAGATTCTTTCCTTAACCGGAGCATTTCTACCTGGACCAGCCCCACCAGGGTCTACAGGACTAACTATTTACTTAGCCGGCGGCCAGGGTCAAGTCGTTGGTGGTAGCGTGGTGGGGCCACTCACGGCCGCAGGCCCAGTAATGGTGATCGCTGCTACGTTTTCCAACGCGACATATGAGAGATTGCCCTTGGAGGATGAAGAAGAAGCAGGTGGCGATCAGGCGCCAGGACTCGGGTCTGGAGGTGGTAGTGCCGTCGACAGATCTCCACCAGGGATTGGCGGAAGTGGCGGGCCGCATCAAGGAGGAGTTTCAGATCCTTCGTCCATGCCAATTTATAATCTGCCACCAAATTTGCTACCAAATGGTGGACAATTAAACCACGAGGCTTACTCTTGGGCTCATGGTGGCCGGACACAATTTTAA 906 53.97 MANRWWTGGQLGLPAGVDHHTSSSSPLRKPDLGISINNIHGGVGHSGGGSGGGDDEEDRENSDEPKEGAIEVATRRSRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEITNGTDVAESVAQFARRRQRGVCVLSGSGTVTNVTLRQPSAPGAVLGLQGRFEILSLTGAFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEDEEEAGGDQAPGLGSGGGSAVDRSPPGIGGSGGPHQGGVSDPSSMPIYNLPPNLLPNGGQLNHEAYSWAHGGRTQF 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3469813 3470718 - Conep03aG0069900.1 Cone3ag0681 434140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0681 301 FunFam AT-hook motif nuclear-localized protein 102 229 - -
Cone3ag0681 301 Gene3D - 103 230 - -
Cone3ag0681 301 ProSiteProfiles PPC domain profile profile. 99 237 IPR005175 -
Cone3ag0681 301 MobiDBLite consensus disorder prediction 17 31 - -
Cone3ag0681 301 MobiDBLite consensus disorder prediction 226 277 - -
Cone3ag0681 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 56 298 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone3ag0681 301 CDD DUF296 103 186 IPR005175 -
Cone3ag0681 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 228 - -
Cone3ag0681 301 MobiDBLite consensus disorder prediction 1 99 - -
Cone3ag0681 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 104 215 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1145 Cone-Chr11:8815268 Cone3ag0681 Cone-Chr3:3469813 5.49E-53 dispersed
Cone14ag0141 Cone-Chr14:683830 Cone3ag0681 Cone-Chr3:3469813 6.78E-115 dispersed
Cone15ag0149 Cone-Chr15:720428 Cone3ag0681 Cone-Chr3:3469813 1.61E-116 dispersed
Cone18ag0437 Cone-Chr18:2129411 Cone3ag0681 Cone-Chr3:3469813 6.76E-54 dispersed
Cone1ag0862 Cone-Chr1:54339575 Cone3ag0681 Cone-Chr3:3469813 2.40E-129 dispersed
Cone1ag1260 Cone-Chr1:56147160 Cone3ag0681 Cone-Chr3:3469813 5.35E-73 dispersed
Cone3ag0681 Cone-Chr3:3469813 Cone5ag0555 Cone-Chr5:2375683 3.49E-124 dispersed
Cone10ag0652 Cone-Chr10:3143000 Cone3ag0681 Cone-Chr3:3469813 1.32E-193 wgd
Cone3ag0681 Cone-Chr3:3469813 Cone7ag0306 Cone-Chr7:1330720 1.64E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0681 - - - 0.0