Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0682 ATGGACCAATCATTTTCTGAATACCCATCTTCTCAATCAGCTTCTTCTTCTTCTGATCAACCAGATGCCATGAAAGTGGACCAAGCTTCTGATCAGGAGGTTTCTTATAGAGGGGTTAGAAGAAGGCCATGGGGAAAATATGCAGCTGAGATAAGGGATTCAACTAGAAATGGAGTTAGGGTTTGGTTAGGAACTTTTGACACAGCTGAGGCTGCTGCTTTAGCCTATGATCAAGCTGCTCTTACAATGAGAGGTTCCTTGGCAGTGCTTAATTTTCCGGCGGAAGTGGTGAGTCAATCGCTAGGTGAAATGGATTGCGGGTTTGAGAAGGGTGTGTCGCCTGTTTTGCAGTTGAAGAAGATGCATTCAATGGAGAGGAAGAATAAGAAGAAAAATTATGAGGACCAAGTCACGGAAGCGGCAGATAATGTGGTGGTTTTTGAGGATTTGGGAGCTGAGTATTTGGAAGAGCTTCTAACTAAATCGGATCAATTTTATAATAATAATAATCCTGATCAAGAGGTTGAGGAGCAATGCACAGCGGCGCCGGACAATGCATGTGATGGCTTTTGA 573 43.46 MDQSFSEYPSSQSASSSSDQPDAMKVDQASDQEVSYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALTMRGSLAVLNFPAEVVSQSLGEMDCGFEKGVSPVLQLKKMHSMERKNKKKNYEDQVTEAADNVVVFEDLGAEYLEELLTKSDQFYNNNNPDQEVEEQCTAAPDNACDGF 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3474558 3475130 + Conep03aG0070000.1 Cone3ag0682 434141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0682 190 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0682 190 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0682 190 MobiDBLite consensus disorder prediction 1 37 - -
Cone3ag0682 190 FunFam Ethylene-responsive transcription factor 2 34 95 - -
Cone3ag0682 190 ProSiteProfiles AP2/ERF domain profile. 35 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0682 190 SUPERFAMILY DNA-binding domain 36 95 IPR016177 GO:0003677(InterPro)
Cone3ag0682 190 CDD AP2 36 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0682 190 MobiDBLite consensus disorder prediction 1 25 - -
Cone3ag0682 190 Pfam AP2 domain 35 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0682 190 PANTHER DNA-BINDING DOMAIN 11 149 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone3ag0682 190 Gene3D AP2/ERF domain 35 95 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone3ag0682 190 SMART rav1_2 35 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0682 Cone-Chr3:3474558 Cone4ag0324 Cone-Chr4:1464822 1.64E-49 dispersed
Cone10ag0653 Cone-Chr10:3151879 Cone3ag0682 Cone-Chr3:3474558 1.01E-78 wgd
Cone3ag0682 Cone-Chr3:3474558 Cone4ag0322 Cone-Chr4:1457242 1.91E-26 wgd
Cone3ag0682 Cone-Chr3:3474558 Cone7ag1000 Cone-Chr7:7732787 2.98E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45814 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0682 K14516 - mdm:103451058 184.111