Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0699 ATGGCGGATAACCCGCCGGAGGGACTAGGGGATGATTTCTTCGAGCAGATTTTGGCGGTAAACCCATCGGCTTATAGTAGTGGAGGAGGAGAAGCTGCAGGTGGGTATGGTAGTGGTACTCACGGACACGAGATGAATTCTATGCCTATGTCCTTGTTGCAGTTGGGAAGTGGTGGTAGTGGAGGAGGTGGAGGTGGAGGTGGGTTGAGAGCGATGGGTGGTTTGGGTATGCCTTTGGGGTTAACATTAGAACAGGGGTTTTTAAGGCAAGAGAGGTTTAGAGAAGAGCTTGAAGCTAATAATAGTCACACTTCTTCTTCTACCTCTTCTTCCATTTATGAGAGAGATTCATCAGTTCATATGAACACTTTGTTTCCAGCGTTTGGACATCATTTGCAAACTCATCATCCTGTCCGTCCGGCAGTTCCAACCCCTAGTCAGCTCCACCAGTACTCTTTCAGGTGCTGCATTTTGTCTCTTTTGCAAGTGTTGTTCGTTTCGTGTTGGCTGATCAATCATCTTTCTACTGATCTTCAGCCCTTTCATAGCCAGCCAACATCCGGGGCAATGGGTGGTGGACCACACCCACCTTCCATCCGTCCGAGGGTGAGAGCAAGGCGAGGGCAAGCAACAGACCCTCATAGTATTGCAGAGCGGTTGCGTCGGGAAAGAATTGCTGAAAGAATGAAGGCTTTGCAGGAGCTAGTTCCTAGTGCCAACAAGACAGATAGGGCAGCTATGCTTGATGAAATTGTGGATTATGTGAAGTTTCTGAGGCTCCAAGTCAAGGTTCTGAGCATGAGCAGACTGGGCGGAGCGAGTGCGGTGGCTCAGCTCGTAGCTGATATGCCCATATCATCATCGGTTGGGAAATAA 876 49.2 MADNPPEGLGDDFFEQILAVNPSAYSSGGGEAAGGYGSGTHGHEMNSMPMSLLQLGSGGSGGGGGGGGLRAMGGLGMPLGLTLEQGFLRQERFREELEANNSHTSSSTSSSIYERDSSVHMNTLFPAFGHHLQTHHPVRPAVPTPSQLHQYSFRCCILSLLQVLFVSCWLINHLSTDLQPFHSQPTSGAMGGGPHPPSIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGASAVAQLVADMPISSSVGK 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3570636 3574447 - Conep03aG0071700.1 Cone3ag0699 434158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0699 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983(InterPro)
Cone3ag0699 291 MobiDBLite consensus disorder prediction 185 213 - -
Cone3ag0699 291 MobiDBLite consensus disorder prediction 24 69 - -
Cone3ag0699 291 FunFam Transcription factor bHLH66 206 271 - -
Cone3ag0699 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 269 IPR036638 GO:0046983(InterPro)
Cone3ag0699 291 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 92 269 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone3ag0699 291 SMART finulus 215 264 IPR011598 GO:0046983(InterPro)
Cone3ag0699 291 Pfam Helix-loop-helix DNA-binding domain 214 259 IPR011598 GO:0046983(InterPro)
Cone3ag0699 291 Gene3D - 204 266 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0699 Cone-Chr3:3570636 Cone7ag0587 Cone-Chr7:2818945 7.56E-41 dispersed
Cone1ag1718 Cone-Chr1:58034294 Cone3ag0699 Cone-Chr3:3570636 3.90E-62 wgd
Cone10ag0673 Cone-Chr10:3253192 Cone3ag0699 Cone-Chr3:3570636 1.27E-142 wgd
Cone17ag0586 Cone-Chr17:3085417 Cone3ag0699 Cone-Chr3:3570636 1.37E-52 wgd
Cone20ag0823 Cone-Chr20:5833869 Cone3ag0699 Cone-Chr3:3570636 3.01E-51 wgd
Cone3ag0699 Cone-Chr3:3570636 Cone5ag0543 Cone-Chr5:2302543 6.37E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45817 PF13177 DNA_pol3_delta2 1.80E-12 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0699 - - - 0.0