Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0701 ATGGAAACAAAACAAAGTACTGGAGCTTCCGTGGAAAGTACAGCATCCATAACAAATACAACCGTGTTTGGGGTTGGTGCTTCCTCTAGTGGTATAGTCTCAGCTGAAACCAACACCATCAATTTTGGAGCAATCACTATTTATGATGGTACTACTACTATCCATGTCCCAAACCAGCCTCGGACCCGTGAATCTCACAAAAACGACAGCTTGCATTTGGAAGACCCCATGCCCGAAGAGTTGAACTTTCCTTATTCGCCAAACCTCAGAAGCTTGCATCTGGAAGAATGTGACTGTTCGGATTTGATCCTTGCTAATGTACCAAACCTCACAAGCTTGTATTTGGAAAACAGCAGTGGCAACAAATTGAACCTCAGCGATTCACCAAGACTCGCAACCTTGCATTTGGAAAGGTACTCCTGCGACGAATTGGAGGTTATTAATTTACACAACTTCACAAGCTTGCATTTGAAAAACTACAAATGTGAGTTTCTGAAGCTTGCTAATTTACCCAACTTCACAACCTTGCATTTCCAAAAATGCCAATGTAGAGATTTGAACCTTGATAACTTACCAAAGCTCACTGGCTTGCATCTGAAAGATTACGAATATGCCAACATGAACCTTGAGAATTTACCAAACCTCACAAGCTTGCATTTGGAACTCTGCGAACGTGACATCCTGAAGGTTCCCAATTTACCAAACCTCAAAAGCTTGCAGTTGAAAAACTACGAATGTAGGGTTTTAGAGGTTACTGATTTACCAAACCTCACAAGCTTGCGTTTGGAAGATTCCTCCTGTGAGGTTATGAACCTTAATAACTTACCAAAAATGGGAAGCACTGGGGAGACTAACTATGGTGAATACACCTACAAAGAGCTTGAGAGAGAACCTTACTGGCCAACCGAGAAGTTAAGAATATCAATAACAGGGGCAGGGGGTTTTATTGCCTCTCACATTGCTCGGAGATTGAAGAGCGAGGGTCATTACATCATAGCTTCAGATTGGAAGAAGAATGAGCATATGACTGAAGACATGTTCTGTCATGAATTCCATCTCGTTGATCTTCGCGTGATGGATAATTGCTTGAAGGTTACAAAGGAAGTTGATCATGTCTTTAACCTTGCTGCTGATATGGGCGGGATGGGCTTCATTCAGTCGAACCATTCTGTTATTATGTATAACAACACTATGATTAGCTTCAACATGCTTGAAGCTGCTAGGATCAATGGAGTTAAGAGGTTCTTTTATGCCTCAAGTGCTTGTATCTATCCTGAATTCAAGCAGTTGGAAACTAATGTGAGCTTGAAGGAGGCAGATGCCTGGCCTGCTGAGCCTCAAGATGCTTATGGATTAGAGAAGCTTGCTACAGAAGAGTTGTGCAAGCACTACACTAAAGATTTTGGCATAGAGTGTCGCATTGGAAGGTTCCATAACATTTATGGTCCTTTCGGAACATGGAAAGGTGGAAGGGAGAAGGCACCTGCTGCTTTTTGCAGAAAGGCTCTCACCTCCATCAATGAGTTTGAGATGTGGGGAGATGGGCTTCAGACTAGATCTTTCACCTTCATTGATGAATGTGTTGAAGGTGTACTTAGGTTGACCAAATCAGATTTCCATGAGCCGGTCAACATTGGAAGTGACGAGATGGTTAGCATGAATGAAATGGCAGAGATCGTACTTAGCTTTGAGAACAAGAAGCTTCCCATCCGCCACATTCCTGGTCCGGAAGGTGTTCGTGGTCGTAATTCCGACAATACCCTCATCAAGGAGAAACTCGGGTGGGCCCCTACCATGAGATTGAAGGATGGGTTGAGAATTACCTACTTTTGGATCAAGGAACAGATTGAGAAAGAGAAGGCTAAAGGCATTGACTTGTCGGTTTACGGATCTTCCAAGGTTGTTGGAACACAAGCCCCGGTTCAACTAGGTTCACTCCGAGCAGCTGATGGGAAGGAATAG 1962 43.32 METKQSTGASVESTASITNTTVFGVGASSSGIVSAETNTINFGAITIYDGTTTIHVPNQPRTRESHKNDSLHLEDPMPEELNFPYSPNLRSLHLEECDCSDLILANVPNLTSLYLENSSGNKLNLSDSPRLATLHLERYSCDELEVINLHNFTSLHLKNYKCEFLKLANLPNFTTLHFQKCQCRDLNLDNLPKLTGLHLKDYEYANMNLENLPNLTSLHLELCERDILKVPNLPNLKSLQLKNYECRVLEVTDLPNLTSLRLEDSSCEVMNLNNLPKMGSTGETNYGEYTYKELEREPYWPTEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKEVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKEADAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSINEFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFHEPVNIGSDEMVSMNEMAEIVLSFENKKLPIRHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQIEKEKAKGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3587955 3592049 + Conep03aG0071900.1 Cone3ag0701 434160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0701 653 Gene3D - 379 611 - -
Cone3ag0701 653 Gene3D Ribonuclease Inhibitor 69 308 IPR032675 -
Cone3ag0701 653 Gene3D - 309 598 - -
Cone3ag0701 653 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 300 619 IPR036291 -
Cone3ag0701 653 SUPERFAMILY L domain-like 77 270 - -
Cone3ag0701 653 Pfam NAD dependent epimerase/dehydratase family 307 546 IPR001509 -
Cone3ag0701 653 CDD GME-like_SDR_e 305 627 IPR033890 GO:0047918(InterPro)|GO:0051287(InterPro)
Cone3ag0701 653 PANTHER EPIMERASE-RELATED 293 618 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0701 K10046 - - csv:101222554 741.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0701 Cone-Chr3:3587955 Cone5ag1166 Cone-Chr5:5237352 6.36E-29 dispersed
Cone1ag1722 Cone-Chr1:58048145 Cone3ag0701 Cone-Chr3:3587955 3.50E-270 wgd
Cone10ag0676 Cone-Chr10:3277983 Cone3ag0701 Cone-Chr3:3587955 5.57E-281 wgd
Cone3ag0701 Cone-Chr3:3587955 Cone5ag0539 Cone-Chr5:2292365 1.74E-269 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g586 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0676 Cone3ag0701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004432 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 1 1 1 3 1 2 43