Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0716 ATGGCTGGTTTGGAGGAATTGAAGAAGAAGCTTACCCCGTTGGGACTTGCAGTGGAATCAACTCTAGACCCTAATGATTCCTGCACATTTTCGAATGGAGGGACTGTTAATTTGTTGAGTAGATCGTATGGGCTGTATAATATTAATGAGCTTGGATTGCAAAAGTGTACGACTTGGCCGGTGGATAATGATTCGGAGTCTAGTGAGAAGACTTACCGATGTGGTTCAAGCGAGATGAGGATATTTGGAGCTATAGGCTGTGGAGCTAGCAGTGTTGTTCAGAGAGCTATTCATATTCCCACTCATAGAATTTTGGCATTGAAGAAGATCAATATCTTTGAAAAGGAGAAAAGGCAACAACTTCTTACAGAGATAAGGACCTTGTGTGAATCACCTTGTTACGAGGGTCTTGTGGAATTCCATGGGGCATTTTATACACCAGACTCTGGTCAAATAAGCATAGCCTTAGAGTACATGGATGGAGGGTCTTTAGCGGATATTTTACGGTTGAAGAAATGTTTACCTGAGCACATTCTTTCATCAATGTTCCGGAAGCTTCTCCGTGGACTTAGCTACTTGCATGGAGTTAGACATTTAGTTCATAGAGATATAAAGCCTGCAAATTTGCTTGTCAATCTCAAGGGTGAGCCAAAAATAACAGATTTCGGTATAAGTGCTGGCTTAGAGAATTCTATGGCAATGTGTGCTACTTTTGTTGGAACGGTAACATACATGTCACCCGAGCGAATTAGAAATGAAAATTATTCATATCCAGCTGATATATGGAGCCTTGGACTTGCTCTCTTCGAGTGTGGTACTGGAGAATTCCCATATTCTGCCGCTGAAGGTCCTGTGAATCTTATGTTACAGATTCTGGAAGATCCATCTCCATCACCACCAAAACAAAAATTTTCACCAGAATTCTGCTCGTTTATTGATGTCTGCTTGCAAAAGGATCCAGATTCTAGGCCAACATCAGATCAACTACTTTCACACCCATTTATCACGAAGTACGAGGATGCACAAGTAGACTTAGAATCATTTGTTCGAGAAGTATTCGATCCAACACAGCGGATGAAGGAGTTGGCAGATATGCTTACAATTCACTATTACTTACTCATGGACGGTCCAAATGAATTCTGGAACCACACAAAGGACTTCTACAACGGAAGTTCAACTCTCAGTTTCTCAGGGAAGCAATTTACGGGTCCAAACGAAATATTCGAGACTCTGACAAACATACAGAGTACACTAGCCGGAGAGTGGCCGCCTGAAAAAATAGTCCATGTTGTGGAGAAACTTCAGTGCCGGGCCCACGGTCCGGGAGGAATTGCAATTAGGGTTTGGGGATCTTTCATAATTGGGAATCAGTTCCTTATATGTGGAGACGGATTACAAGCCGAGGGAATTCCGAATTTTAAGGATCTTGCCATTGATGTTTCGAGTAAGAGAATGGGAACGTTTCGAGAACAGTTTGTGATGGAGCCAAGTAATGTTATTGGTTGCTACGTAATAGCCAAACAAGAGCTTTACATAACTCAAGTAGAGAACTAG 1554 41.96 MAGLEELKKKLTPLGLAVESTLDPNDSCTFSNGGTVNLLSRSYGLYNINELGLQKCTTWPVDNDSESSEKTYRCGSSEMRIFGAIGCGASSVVQRAIHIPTHRILALKKINIFEKEKRQQLLTEIRTLCESPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRLKKCLPEHILSSMFRKLLRGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNENYSYPADIWSLGLALFECGTGEFPYSAAEGPVNLMLQILEDPSPSPPKQKFSPEFCSFIDVCLQKDPDSRPTSDQLLSHPFITKYEDAQVDLESFVREVFDPTQRMKELADMLTIHYYLLMDGPNEFWNHTKDFYNGSSTLSFSGKQFTGPNEIFETLTNIQSTLAGEWPPEKIVHVVEKLQCRAHGPGGIAIRVWGSFIIGNQFLICGDGLQAEGIPNFKDLAIDVSSKRMGTFREQFVMEPSNVIGCYVIAKQELYITQVEN 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3670629 3673912 - Conep03aG0073700.1 Cone3ag0716 434175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0716 517 Gene3D Phosphorylase Kinase; domain 1 73 154 - -
Cone3ag0716 517 SMART serkin_6 79 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0716 517 ProSiteProfiles Nuclear transport factor 2 domain profile. 362 512 IPR018222 -
Cone3ag0716 517 FunFam mitogen-activated protein kinase kinase 3 51 160 - -
Cone3ag0716 517 CDD PKc_MAPKK_plant_like 77 339 - -
Cone3ag0716 517 SUPERFAMILY Protein kinase-like (PK-like) 81 355 IPR011009 -
Cone3ag0716 517 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524(InterPro)
Cone3ag0716 517 Gene3D Transferase(Phosphotransferase) domain 1 155 358 - -
Cone3ag0716 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0716 517 Gene3D - 359 512 - -
Cone3ag0716 517 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 59 367 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cone3ag0716 517 ProSiteProfiles Protein kinase domain profile. 79 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0716 517 FunFam mitogen-activated protein kinase kinase 3 161 357 - -
Cone3ag0716 517 SUPERFAMILY NTF2-like 360 512 IPR032710 -
Cone3ag0716 517 FunFam Mitogen-activated protein kinase kinase 3 359 513 - -
Cone3ag0716 517 Pfam Protein kinase domain 83 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0716 K20607 - - csv:101217978 859.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1378 Cone-Chr20:8798189 Cone3ag0716 Cone-Chr3:3670629 2.25E-49 dispersed
Cone3ag0716 Cone-Chr3:3670629 Cone7ag1164 Cone-Chr7:8676600 3.18E-76 dispersed
Cone10ag0698 Cone-Chr10:3519546 Cone3ag0716 Cone-Chr3:3670629 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0048 . 27 353 MAP Kinase Kinase Gene Family AT4G26070 69.7 2.9e-131 465.7
Cone7ag0046 . 27 353 MAP Kinase Kinase Gene Family AT4G26070 69.4 6.5e-131 464.5
Cone7ag0750 . 20 351 MAP Kinase Kinase Gene Family AT4G26070 62.2 2.1e-121 433.0
Cone7ag1164 . 29 355 MAP Kinase Kinase Gene Family AT4G26070 56.1 3.1e-109 392.5
Cone4ag0048 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.1e-135 480.3
Cone7ag0046 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 6.9e-133 471.1
Cone7ag0750 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 1.8e-120 429.9
Cone7ag1164 . 10 328 MAP Kinase Kinase Gene Family AT4G29810 59.7 1.8e-109 393.3
Cone3ag0716 . 31 516 MAP Kinase Kinase Gene Family AT5G40440 76.5 1.3e-223 773.1
Cone10ag0698 . 31 516 MAP Kinase Kinase Gene Family AT5G40440 76.5 1.2e-221 766.5
Cone20ag1378 . 28 372 MAP Kinase Kinase Gene Family AT1G51660 74.5 8.4e-145 510.8
Cone17ag0025 . 76 362 MAP Kinase Kinase Gene Family AT1G51660 81.2 6.1e-135 478.0
Cone7ag0824 . 22 329 MAP Kinase Kinase Gene Family AT1G51660 73.6 9.4e-128 454.1
Cone4ag0888 . 1 368 MAP Kinase Kinase Gene Family AT1G51660 66.8 1.3e-121 433.7
Cone2ag0738 . 49 312 MAP Kinase Kinase Gene Family AT1G51660 53.4 2.0e-77 287.0
Cone20ag1378 . 28 372 MAP Kinase Kinase Gene Family AT3G21220 71.3 1.9e-138 489.6
Cone17ag0025 . 76 364 MAP Kinase Kinase Gene Family AT3G21220 79.2 3.4e-135 478.8
Cone7ag0824 . 1 329 MAP Kinase Kinase Gene Family AT3G21220 69.0 2.4e-125 446.0
Cone4ag0888 . 1 374 MAP Kinase Kinase Gene Family AT3G21220 67.6 6.0e-124 441.4
Cone2ag0738 . 43 314 MAP Kinase Kinase Gene Family AT3G21220 53.7 1.2e-79 294.3
Cone7ag1164 . 1 358 MAP Kinase Kinase Gene Family AT5G56580 83.6 4.3e-170 594.7
Cone4ag0048 . 10 342 MAP Kinase Kinase Gene Family AT5G56580 61.1 4.7e-116 415.2
Cone7ag0046 . 10 342 MAP Kinase Kinase Gene Family AT5G56580 61.1 2.3e-115 412.9
Cone7ag0750 . 11 340 MAP Kinase Kinase Gene Family AT5G56580 58.4 2.3e-110 396.4
Cone2ag0738 . 1 312 MAP Kinase Kinase Gene Family AT1G18350 62.5 1.0e-106 384.0
Cone17ag0025 . 65 335 MAP Kinase Kinase Gene Family AT1G18350 50.5 1.7e-77 287.0
Cone4ag0888 . 62 330 MAP Kinase Kinase Gene Family AT1G18350 50.7 3.2e-73 272.7
Cone2ag0738 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 65.4 1.4e-111 400.2
Cone17ag0025 . 79 335 MAP Kinase Kinase Gene Family AT1G73500 51.7 4.4e-78 288.9
Cone4ag0888 . 74 330 MAP Kinase Kinase Gene Family AT1G73500 51.7 1.3e-74 277.3
Cone12ag0478 . 59 335 MAP Kinase Kinase Gene Family AT1G73500 50.9 1.3e-74 277.3
Cone12ag0478 . 1 333 MAP Kinase Kinase Gene Family AT1G32320 53.3 4.8e-85 312.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82681 PF01612 DNA_pol_A_exo1 8.70E-44 CL0219 Cone PK