Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0716 ATGGCTGGTTTGGAGGAATTGAAGAAGAAGCTTACCCCGTTGGGACTTGCAGTGGAATCAACTCTAGACCCTAATGATTCCTGCACATTTTCGAATGGAGGGACTGTTAATTTGTTGAGTAGATCGTATGGGCTGTATAATATTAATGAGCTTGGATTGCAAAAGTGTACGACTTGGCCGGTGGATAATGATTCGGAGTCTAGTGAGAAGACTTACCGATGTGGTTCAAGCGAGATGAGGATATTTGGAGCTATAGGCTGTGGAGCTAGCAGTGTTGTTCAGAGAGCTATTCATATTCCCACTCATAGAATTTTGGCATTGAAGAAGATCAATATCTTTGAAAAGGAGAAAAGGCAACAACTTCTTACAGAGATAAGGACCTTGTGTGAATCACCTTGTTACGAGGGTCTTGTGGAATTCCATGGGGCATTTTATACACCAGACTCTGGTCAAATAAGCATAGCCTTAGAGTACATGGATGGAGGGTCTTTAGCGGATATTTTACGGTTGAAGAAATGTTTACCTGAGCACATTCTTTCATCAATGTTCCGGAAGCTTCTCCGTGGACTTAGCTACTTGCATGGAGTTAGACATTTAGTTCATAGAGATATAAAGCCTGCAAATTTGCTTGTCAATCTCAAGGGTGAGCCAAAAATAACAGATTTCGGTATAAGTGCTGGCTTAGAGAATTCTATGGCAATGTGTGCTACTTTTGTTGGAACGGTAACATACATGTCACCCGAGCGAATTAGAAATGAAAATTATTCATATCCAGCTGATATATGGAGCCTTGGACTTGCTCTCTTCGAGTGTGGTACTGGAGAATTCCCATATTCTGCCGCTGAAGGTCCTGTGAATCTTATGTTACAGATTCTGGAAGATCCATCTCCATCACCACCAAAACAAAAATTTTCACCAGAATTCTGCTCGTTTATTGATGTCTGCTTGCAAAAGGATCCAGATTCTAGGCCAACATCAGATCAACTACTTTCACACCCATTTATCACGAAGTACGAGGATGCACAAGTAGACTTAGAATCATTTGTTCGAGAAGTATTCGATCCAACACAGCGGATGAAGGAGTTGGCAGATATGCTTACAATTCACTATTACTTACTCATGGACGGTCCAAATGAATTCTGGAACCACACAAAGGACTTCTACAACGGAAGTTCAACTCTCAGTTTCTCAGGGAAGCAATTTACGGGTCCAAACGAAATATTCGAGACTCTGACAAACATACAGAGTACACTAGCCGGAGAGTGGCCGCCTGAAAAAATAGTCCATGTTGTGGAGAAACTTCAGTGCCGGGCCCACGGTCCGGGAGGAATTGCAATTAGGGTTTGGGGATCTTTCATAATTGGGAATCAGTTCCTTATATGTGGAGACGGATTACAAGCCGAGGGAATTCCGAATTTTAAGGATCTTGCCATTGATGTTTCGAGTAAGAGAATGGGAACGTTTCGAGAACAGTTTGTGATGGAGCCAAGTAATGTTATTGGTTGCTACGTAATAGCCAAACAAGAGCTTTACATAACTCAAGTAGAGAACTAG 1554 41.96 MAGLEELKKKLTPLGLAVESTLDPNDSCTFSNGGTVNLLSRSYGLYNINELGLQKCTTWPVDNDSESSEKTYRCGSSEMRIFGAIGCGASSVVQRAIHIPTHRILALKKINIFEKEKRQQLLTEIRTLCESPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRLKKCLPEHILSSMFRKLLRGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNENYSYPADIWSLGLALFECGTGEFPYSAAEGPVNLMLQILEDPSPSPPKQKFSPEFCSFIDVCLQKDPDSRPTSDQLLSHPFITKYEDAQVDLESFVREVFDPTQRMKELADMLTIHYYLLMDGPNEFWNHTKDFYNGSSTLSFSGKQFTGPNEIFETLTNIQSTLAGEWPPEKIVHVVEKLQCRAHGPGGIAIRVWGSFIIGNQFLICGDGLQAEGIPNFKDLAIDVSSKRMGTFREQFVMEPSNVIGCYVIAKQELYITQVEN 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3670629 3673912 - Conep03aG0073700.1 Cone3ag0716 434175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0716 517 Gene3D Phosphorylase Kinase; domain 1 73 154 - -
Cone3ag0716 517 SMART serkin_6 79 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0716 517 ProSiteProfiles Nuclear transport factor 2 domain profile. 362 512 IPR018222 -
Cone3ag0716 517 FunFam mitogen-activated protein kinase kinase 3 51 160 - -
Cone3ag0716 517 CDD PKc_MAPKK_plant_like 77 339 - -
Cone3ag0716 517 SUPERFAMILY Protein kinase-like (PK-like) 81 355 IPR011009 -
Cone3ag0716 517 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524(InterPro)
Cone3ag0716 517 Gene3D Transferase(Phosphotransferase) domain 1 155 358 - -
Cone3ag0716 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0716 517 Gene3D - 359 512 - -
Cone3ag0716 517 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 59 367 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cone3ag0716 517 ProSiteProfiles Protein kinase domain profile. 79 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0716 517 FunFam mitogen-activated protein kinase kinase 3 161 357 - -
Cone3ag0716 517 SUPERFAMILY NTF2-like 360 512 IPR032710 -
Cone3ag0716 517 FunFam Mitogen-activated protein kinase kinase 3 359 513 - -
Cone3ag0716 517 Pfam Protein kinase domain 83 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1378 Cone-Chr20:8798189 Cone3ag0716 Cone-Chr3:3670629 2.25E-49 dispersed
Cone3ag0716 Cone-Chr3:3670629 Cone7ag1164 Cone-Chr7:8676600 3.18E-76 dispersed
Cone10ag0698 Cone-Chr10:3519546 Cone3ag0716 Cone-Chr3:3670629 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82681 PF01612 DNA_pol_A_exo1 8.70E-44 CL0219 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0716 K20607 - csv:101217978 859.366