Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0718 ATGGCTTCTTCGGAACAACAGCACGACACCGTTTTCCCCGACGAAGACCTCGACGACGATGGCGCTTCGCTCGACGATGACGACGACGACGACGATGATGACGATGAGGAGGAAGAATTGGAATTGTTGAACGACGACGTCATCTCTCCTTCGCCTTCTACGTCATCTTTCGCCGCGGTCACCCTCGCTGATGCTGCTGCCACTGTCACTGTCGCGATTCCTAGCGCTGCCGTAGTTTCTAACTCTGTCCCTCCTAAATCCACCGCGACTACCGCATCAACTGTCGCTGCTAGTCCTTCCGATCTTAATAAACGGCCACGGTTTAATACTCCGACGTCAACGATGAAAATTGAGGCTGTGATTTTACCGCATGAGGAGAAGAAGCCGTTGGATGAGTCTCGGAAGCTTTTTCAACGGCTGTGGACCGATGAGGATGAGATCGAACTCTTACAAGGGTTTCTCGATTACACGACTCAGCGAGGATCCACTCAACATCACCAAAACGACACCGCTTTGTTCTACGATCAGATTAAATCCAAGCTTCAGCTGGATTTCAACAAGAATCAGCTTGTCGAGAAGCTTCGGAGGTTGAAGAAGAAGTATCGAAATGTTATGAGTAAGATCAGCTCCGGCAAAGAACTCAGTTTCAAAAGCGCTCACGATCATGCCACCTTTCAAATATCTCGCAAGATCTGGGGCGATACTGGCCGAATTGGAGCAGAGGATAATGCTCTAGATGATGAAGATCCCAATTCTAACCCTAATTTCCATCATATGGAACCAAAGGACGAGGAAATGGCGGGATATAGTGCAGAGAAGAAGGCAACAAGCACGCCAAGATCGAGGAAGCGATCCAGACCTGGATCAGGATTGAGAACCGAAGAAACAATGCCAGCTTCGAACGAGATTACAAACAGAGATAAGATATGTGTTGACAATAACAGCAATGTGAATAACATTTCAGGGGTCATTGAGGAGACAGTGAGAAGTTGTTTGTCTCCATTGTTCAAGGAGTTGTTGAATACTGCAATGGGAAATCCATGTGGGTCTAGGGCATATTCCGGATTGGCATCAAATCCTATACCCATGAGTTTCGGTCCAGGGTCGATGAATTTTGGGAGTGGAGGGGAAATTGTAGATGATAGATGGAGGAAGCAGCAGATTTTGGAGCTAGAGGTTTATTCAAAGCGGCTCGAGCTGGTTCAGGATCAAATCAAGGTGGCATTGGACGAATTGCGATCCACAGGAGGGAGGTGA 1257 47.81 MASSEQQHDTVFPDEDLDDDGASLDDDDDDDDDDDEEEELELLNDDVISPSPSTSSFAAVTLADAAATVTVAIPSAAVVSNSVPPKSTATTASTVAASPSDLNKRPRFNTPTSTMKIEAVILPHEEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTTQRGSTQHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKELSFKSAHDHATFQISRKIWGDTGRIGAEDNALDDEDPNSNPNFHHMEPKDEEMAGYSAEKKATSTPRSRKRSRPGSGLRTEETMPASNEITNRDKICVDNNSNVNNISGVIEETVRSCLSPLFKELLNTAMGNPCGSRAYSGLASNPIPMSFGPGSMNFGSGGEIVDDRWRKQQILELEVYSKRLELVQDQIKVALDELRSTGGR 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3677442 3679281 + Conep03aG0073900.1 Cone3ag0718 434177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0718 418 MobiDBLite consensus disorder prediction 238 301 - -
Cone3ag0718 418 Coils Coil 187 207 - -
Cone3ag0718 418 MobiDBLite consensus disorder prediction 1 54 - -
Cone3ag0718 418 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 137 233 IPR053932 -
Cone3ag0718 418 Coils Coil 391 411 - -
Cone3ag0718 418 MobiDBLite consensus disorder prediction 12 44 - -
Cone3ag0718 418 MobiDBLite consensus disorder prediction 81 109 - -
Cone3ag0718 418 MobiDBLite consensus disorder prediction 251 270 - -
Cone3ag0718 418 PANTHER BNAANNG10740D PROTEIN-RELATED 19 414 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0718 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0718 Cone-Chr3:3677442 Cone8ag1459 Cone-Chr8:11236887 5.87E-16 dispersed
Cone1ag0501 Cone-Chr1:4879588 Cone3ag0718 Cone-Chr3:3677442 1.40E-11 transposed
Cone1ag1730 Cone-Chr1:58078486 Cone3ag0718 Cone-Chr3:3677442 5.69E-42 wgd
Cone10ag0700 Cone-Chr10:3525920 Cone3ag0718 Cone-Chr3:3677442 6.80E-233 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag0718 . 126 341 GeBP Transcription Factor Family AT3G04930 54.0 3.1e-52 203.4
Cone10ag0700 . 132 347 GeBP Transcription Factor Family AT3G04930 52.5 1.2e-51 201.4
Cone10ag0700 . 132 420 GeBP Transcription Factor Family AT5G28040 50.5 6.3e-67 252.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45819 PF02214 BTB_2 2.50E-17 CL0033 Cone TF