Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0718 ATGGCTTCTTCGGAACAACAGCACGACACCGTTTTCCCCGACGAAGACCTCGACGACGATGGCGCTTCGCTCGACGATGACGACGACGACGACGATGATGACGATGAGGAGGAAGAATTGGAATTGTTGAACGACGACGTCATCTCTCCTTCGCCTTCTACGTCATCTTTCGCCGCGGTCACCCTCGCTGATGCTGCTGCCACTGTCACTGTCGCGATTCCTAGCGCTGCCGTAGTTTCTAACTCTGTCCCTCCTAAATCCACCGCGACTACCGCATCAACTGTCGCTGCTAGTCCTTCCGATCTTAATAAACGGCCACGGTTTAATACTCCGACGTCAACGATGAAAATTGAGGCTGTGATTTTACCGCATGAGGAGAAGAAGCCGTTGGATGAGTCTCGGAAGCTTTTTCAACGGCTGTGGACCGATGAGGATGAGATCGAACTCTTACAAGGGTTTCTCGATTACACGACTCAGCGAGGATCCACTCAACATCACCAAAACGACACCGCTTTGTTCTACGATCAGATTAAATCCAAGCTTCAGCTGGATTTCAACAAGAATCAGCTTGTCGAGAAGCTTCGGAGGTTGAAGAAGAAGTATCGAAATGTTATGAGTAAGATCAGCTCCGGCAAAGAACTCAGTTTCAAAAGCGCTCACGATCATGCCACCTTTCAAATATCTCGCAAGATCTGGGGCGATACTGGCCGAATTGGAGCAGAGGATAATGCTCTAGATGATGAAGATCCCAATTCTAACCCTAATTTCCATCATATGGAACCAAAGGACGAGGAAATGGCGGGATATAGTGCAGAGAAGAAGGCAACAAGCACGCCAAGATCGAGGAAGCGATCCAGACCTGGATCAGGATTGAGAACCGAAGAAACAATGCCAGCTTCGAACGAGATTACAAACAGAGATAAGATATGTGTTGACAATAACAGCAATGTGAATAACATTTCAGGGGTCATTGAGGAGACAGTGAGAAGTTGTTTGTCTCCATTGTTCAAGGAGTTGTTGAATACTGCAATGGGAAATCCATGTGGGTCTAGGGCATATTCCGGATTGGCATCAAATCCTATACCCATGAGTTTCGGTCCAGGGTCGATGAATTTTGGGAGTGGAGGGGAAATTGTAGATGATAGATGGAGGAAGCAGCAGATTTTGGAGCTAGAGGTTTATTCAAAGCGGCTCGAGCTGGTTCAGGATCAAATCAAGGTGGCATTGGACGAATTGCGATCCACAGGAGGGAGGTGA 1257 47.81 MASSEQQHDTVFPDEDLDDDGASLDDDDDDDDDDDEEEELELLNDDVISPSPSTSSFAAVTLADAAATVTVAIPSAAVVSNSVPPKSTATTASTVAASPSDLNKRPRFNTPTSTMKIEAVILPHEEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTTQRGSTQHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKELSFKSAHDHATFQISRKIWGDTGRIGAEDNALDDEDPNSNPNFHHMEPKDEEMAGYSAEKKATSTPRSRKRSRPGSGLRTEETMPASNEITNRDKICVDNNSNVNNISGVIEETVRSCLSPLFKELLNTAMGNPCGSRAYSGLASNPIPMSFGPGSMNFGSGGEIVDDRWRKQQILELEVYSKRLELVQDQIKVALDELRSTGGR 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3677442 3679281 + Conep03aG0073900.1 Cone3ag0718 434177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0718 418 MobiDBLite consensus disorder prediction 238 301 - -
Cone3ag0718 418 Coils Coil 187 207 - -
Cone3ag0718 418 MobiDBLite consensus disorder prediction 1 54 - -
Cone3ag0718 418 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 137 233 IPR053932 -
Cone3ag0718 418 Coils Coil 391 411 - -
Cone3ag0718 418 MobiDBLite consensus disorder prediction 12 44 - -
Cone3ag0718 418 MobiDBLite consensus disorder prediction 81 109 - -
Cone3ag0718 418 MobiDBLite consensus disorder prediction 251 270 - -
Cone3ag0718 418 PANTHER BNAANNG10740D PROTEIN-RELATED 19 414 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0718 Cone-Chr3:3677442 Cone8ag1459 Cone-Chr8:11236887 5.87E-16 dispersed
Cone1ag0501 Cone-Chr1:4879588 Cone3ag0718 Cone-Chr3:3677442 1.40E-11 transposed
Cone1ag1730 Cone-Chr1:58078486 Cone3ag0718 Cone-Chr3:3677442 5.69E-42 wgd
Cone10ag0700 Cone-Chr10:3525920 Cone3ag0718 Cone-Chr3:3677442 6.80E-233 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45819 PF02214 BTB_2 2.50E-17 CL0033 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0718 - - - 0.0