Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0722 ATGGCGAAATGCTTTAATCCGAAAACGCAGACCTACACGTCGCCTAGACCTCCCATCCACTTCCCTATCAATCCCGACTTGTCGATTGCCAAATTTCTAATCTCAAACTCATCCTCCTCCTTCCCTCACAGCATCGCTCTGATCGATGCAGATACCGGCGAAAGCCTAACCTTCCACCAGCTCAAGATCCAAGTCTCCAAGCTAGCTCACGCTTTACTTGAGGTCTTTAACCTCACCAAAAATGACGTTGTCCTTATCTTCGCTCCAAACTCGATCCACTTCCCTCTGTGTTTTCTCGCCATTGTTTCCATCGGAGCTATCGCCACCACCTGTAATCCTTCTTATACGAAGGAAGAGCTCTTGAAGCAGGTTAAAGATTGTAGGCCGAAGCTCGTTTTTACCGTCCCTGAATTCTACGAAAAGGTGAGAGAATTGAATTTGCCGTCTGTAATCATATCCTCTGATCCGATTTCTAGTTCGGATCCCAATGTGTGTAGCTACAGCGAATTAATCAACAAATCGAACAAGGTGTCAGATTTACCGGCGATCAAAGTAACTCAAAGCGATGTAGCGGCGCTTCTGTACTCGTCGGGAACGACGGGAACGAGCAAGGGAGTGATCCTGACGCATAAGAATTTCATTGCGGCGTCGTTTATGGTGATTCAGGATCAAAATCTTGAAGGCGATCCAAAAAACGTGTTCCTCTGCTTCCTGCCTATGTTCCACGTGTTCGGACTGTCTGTGATTTTGTACTCTCAGCTGCGGAGAGGAAACACGGTGGTTTCCATGGCGAAGTTCGAGCTCGATAAGGCATTAAAGGCGGTGCAGAAATTCAGAGTAACGCATCTGTACGTTGTTCCGCCTGTAATGATTGCTCTGGCTAAGCAAACTGCGGCGTTGAAAAAGTACGATCTGTCGTCGCTGAGGCAGATTCTATCGGGTGCAGCTCCTCTCGGAAAAGATATAATGGAAGAATGCGCTGTAAATATCCCTCATGCCAACATCCTTCAGGGATATGGTATGACTGAAACTTGTGGAGTTATTTCGATCGAGAACATGACGGAAGGATCTCGCCTTTCGGGCTCAACTGGAGTACTTGTTTCAGGTGTTGAAGCTCAAATCGTTAGTGTAGATACTTCCAACCTTCTTCCCCCTCAACAATTGGGGGAAATCTGGGTACGTGGGCCCAATATGATGAAAGGCTATTTGAACAACATAGAGGCCACAAAGCAAACAATAGATGATCAAGGCTGGGTTCATACCGGAGACATAGGGTATTTCAACGAAGAAGGCGAGCTGTTCGTCGTGGATCGAATCAAAGAACTAATAAAAACTTACGCATTTCAGGTGGCACCTGCAGAGCTTGAAGGGCTGCTTCTTTCTCACCCTGAAATAGTAGATGCTGCTGTCATCCCATATCCTGATGCAAAAGCCGGTGAGGTGCCCGGTGCATTCGTTGTTCGCTCGCCTAACAGCTCAATTACAGAAGAAGAAGTTCGGAAATTCATTGCCAGTCAGGTTGCGCCGTTTAAAAGATTACGGAGTGTTAGTTTCGTGACTAGTGTTCCAAAGTCAGCTTCCGGTAAGCTTTTAAGAAGGGAGCTCATCCAAAGTATCCGAGCCAAACTGTAG 1632 46.75 MAKCFNPKTQTYTSPRPPIHFPINPDLSIAKFLISNSSSSFPHSIALIDADTGESLTFHQLKIQVSKLAHALLEVFNLTKNDVVLIFAPNSIHFPLCFLAIVSIGAIATTCNPSYTKEELLKQVKDCRPKLVFTVPEFYEKVRELNLPSVIISSDPISSSDPNVCSYSELINKSNKVSDLPAIKVTQSDVAALLYSSGTTGTSKGVILTHKNFIAASFMVIQDQNLEGDPKNVFLCFLPMFHVFGLSVILYSQLRRGNTVVSMAKFELDKALKAVQKFRVTHLYVVPPVMIALAKQTAALKKYDLSSLRQILSGAAPLGKDIMEECAVNIPHANILQGYGMTETCGVISIENMTEGSRLSGSTGVLVSGVEAQIVSVDTSNLLPPQQLGEIWVRGPNMMKGYLNNIEATKQTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKTYAFQVAPAELEGLLLSHPEIVDAAVIPYPDAKAGEVPGAFVVRSPNSSITEEEVRKFIASQVAPFKRLRSVSFVTSVPKSASGKLLRRELIQSIRAKL 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3690259 3692674 - Conep03aG0074300.1 Cone3ag0722 434181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0722 543 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Cone3ag0722 543 Gene3D - 12 440 IPR042099 -
Cone3ag0722 543 Gene3D - 441 542 IPR045851 -
Cone3ag0722 543 Pfam AMP-binding enzyme 39 403 IPR000873 -
Cone3ag0722 543 SUPERFAMILY Acetyl-CoA synthetase-like 33 539 - -
Cone3ag0722 543 CDD 4CL 21 535 - -
Cone3ag0722 543 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Cone3ag0722 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 440 - -
Cone3ag0722 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Cone3ag0722 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 535 - GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1319 Cone-Chr11:9727013 Cone3ag0722 Cone-Chr3:3690259 7.96E-235 dispersed
Cone13ag1252 Cone-Chr13:9513602 Cone3ag0722 Cone-Chr3:3690259 2.90E-85 dispersed
Cone18ag0258 Cone-Chr18:1244953 Cone3ag0722 Cone-Chr3:3690259 2.47E-231 dispersed
Cone3ag0722 Cone-Chr3:3690259 Cone4ag2006 Cone-Chr4:13992231 2.35E-148 dispersed
Cone3ag0722 Cone-Chr3:3690259 Cone7ag1043 Cone-Chr7:8019733 1.52E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0722 K01904 - csv:101204417 743.036