Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0750 ATGACTCACATTGCGGTTGAAAGAAACAGAAGGAAGCTAATGAATCAGTATCTCTCTGGCATCAGATCCTTAATGCCAGATACTTATGTCCAAAGGGGTGACCAAGCTTCAATCATTGGTGGTGCAATTAACTTTGTGAAAGAGCTAGAGCAAAAAGTACAGTTCCTTGGAGCTCAAACTACAGATCATGAACATAGCCATGGTCATGATGATCATACGAAGACAATTAATTCAAATATTGGGGCTAGTAGTAGTGGCTCTCTTTCTTTCTTTTCCCACTATTTCTCACAACACTTTACCTTCCCACAATACTCATCAACCTCAATGGGATCCATTGCTGACATAGAGGTTAACATAGCAGAAAGCCATGCCAACATCAAGGTAAGGTCAAAGAGAAGGCCTAAGCAGCTCTTGAAGCTGGTTAGTGGGTTGCAGACCTTGAGGCTCACCATTCTTCACCTTAATGTCTCTACAATGGACCCTGTTGTGTTCTACTGTCTCAATGTCAAGGTAGAGGATGATTGCAAGCTTGCTACAGTGGATGAAATTGCAACAGCCGTTTATCAGTTGATTTGTAGAATTCATGAAGAGGCAATATTGAATATGTGA 609 41.22 MTHIAVERNRRKLMNQYLSGIRSLMPDTYVQRGDQASIIGGAINFVKELEQKVQFLGAQTTDHEHSHGHDDHTKTINSNIGASSSGSLSFFSHYFSQHFTFPQYSSTSMGSIADIEVNIAESHANIKVRSKRRPKQLLKLVSGLQTLRLTILHLNVSTMDPVVFYCLNVKVEDDCKLATVDEIATAVYQLICRIHEEAILNM 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3894037 3895229 - Conep03aG0077300.1 Cone3ag0750 434209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0750 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983(InterPro)
Cone3ag0750 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 64 IPR036638 GO:0046983(InterPro)
Cone3ag0750 202 MobiDBLite consensus disorder prediction 59 78 - -
Cone3ag0750 202 SMART finulus 4 55 IPR011598 GO:0046983(InterPro)
Cone3ag0750 202 Pfam Helix-loop-helix DNA-binding domain 1 50 IPR011598 GO:0046983(InterPro)
Cone3ag0750 202 PANTHER MAX DIMERIZATION, MAD 1 193 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone3ag0750 202 Gene3D - 1 66 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0750 Cone-Chr3:3894037 Cone7ag1260 Cone-Chr7:9361322 1.24E-56 dispersed
Cone10ag0749 Cone-Chr10:3791513 Cone3ag0750 Cone-Chr3:3894037 3.72E-109 wgd
Cone3ag0750 Cone-Chr3:3894037 Cone5ag0020 Cone-Chr5:133301 7.49E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45820 PF10551 MULE 6.10E-23 CL0219 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0750 - - - 0.0