Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0756 ATGGACCAGCAAGGGCATAACCAAAGTCCATCAATGGGGGTAGTCGGCAGTGGTCCCCAATTGCCATACGGAACTAATTTTTACCAACCTACTCAAATGACTGGAATGCCCCCAGGTCAACCTAGTGGGCCCCCTTATTCTCAACACCAGCTCGCTTACCAACACATCCACCAGCAACAACAGCAGCAACTCCAACAGCAGCTCCAAAATTTTTGGGCCAATCAGTACCAAGAAATTGAACGAGTGACCGATTTCAAGAACCATAGCCTTCCCTTAGCAAGGATCAAGAAGATCATGAAAGCTGATGAGGATGTAAGAATGATATCAGCTGAGGCGCCTGTCATATTTGCTCGAGCTTGTGAGATGTTCATCTTGGAGTTGACTTTAAGGTCTTGGAATCACACAGAAGAGAATAAGAGGAGGACCCTTCAGAAGAATGATATTGCGGCAGCTATTACGAGGACTGATATCTTTGACTTTTTGGTTGATATTGTGCCAAGGGAGGATTTGAAGGATGAAGTGTTGACTTCGATTCCGAGAGGAACAGTTCCGGTTGGGGGGGCGGCGGATGCAATGTCATATTACCACATGCCACCTCAACATGGGCCTCCTCCTCAGGTTGCTCCTCCCGGGATGATGATGGGTAAGCCTCTTATGGATCAATCGATGTATGCTCAGCAGCCTCCTCATGCATACTTGTCCCCGCAAATGTGGCAGCCACCTCCACCTGATCAACAGCCATCTCCTTCTGATCATTAA 759 47.96 MDQQGHNQSPSMGVVGSGPQLPYGTNFYQPTQMTGMPPGQPSGPPYSQHQLAYQHIHQQQQQQLQQQLQNFWANQYQEIERVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGTVPVGGAADAMSYYHMPPQHGPPPQVAPPGMMMGKPLMDQSMYAQQPPHAYLSPQMWQPPPPDQQPSPSDH 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3923223 3925606 + Conep03aG0077900.1 Cone3ag0756 434215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0756 252 MobiDBLite consensus disorder prediction 1 21 - -
Cone3ag0756 252 MobiDBLite consensus disorder prediction 1 15 - -
Cone3ag0756 252 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 61 186 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone3ag0756 252 FunFam Nuclear transcription factor Y subunit gamma 54 167 - -
Cone3ag0756 252 Pfam Core histone H2A/H2B/H3/H4 49 152 IPR007125 GO:0003677(InterPro)
Cone3ag0756 252 SUPERFAMILY Histone-fold 57 161 IPR009072 GO:0046982(InterPro)
Cone3ag0756 252 MobiDBLite consensus disorder prediction 234 252 - -
Cone3ag0756 252 Gene3D Histone, subunit A 51 167 IPR009072 GO:0046982(InterPro)
Cone3ag0756 252 MobiDBLite consensus disorder prediction 217 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0756 K08066 - - vvi:100258035 310.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1761 Cone-Chr1:58245827 Cone3ag0756 Cone-Chr3:3923223 1.69E-88 dispersed
Cone3ag0756 Cone-Chr3:3923223 Cone3ag1500 Cone-Chr3:33585649 8.69E-69 dispersed
Cone10ag0745 Cone-Chr10:3757038 Cone3ag0756 Cone-Chr3:3923223 8.88E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g441 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag0756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone19ag0213 . 36 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 1.6e-88 323.2
Cone13ag0228 . 36 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.0 2.7e-88 322.4
Cone10ag1432 . 72 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.1 9.8e-54 207.6
Cone3ag1500 . 72 232 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.2 3.7e-53 205.7
Cone3ag0756 . 71 239 CCAAT-HAP5 Transcription Factor Family AT3G48590 62.9 1.1e-49 194.1
Cone1ag1761 . 62 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 63.0 3.3e-49 192.6
Cone10ag0745 . 79 206 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.9 1.5e-46 183.7
Cone1ag1761 . 6 239 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.2 4.1e-52 202.2
Cone10ag0745 . 1 174 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.0 2.6e-51 199.5
Cone3ag1500 . 22 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.1 2.5e-49 193.0
Cone10ag1432 . 22 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.8 2.5e-49 193.0
Cone3ag0756 . 1 166 CCAAT-HAP5 Transcription Factor Family AT1G08970 66.3 2.7e-48 189.5
Cone13ag0228 . 36 134 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cone19ag0213 . 36 134 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cone1ag1761 . 6 244 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.2 5.0e-60 228.4
Cone3ag0756 . 70 246 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.4 6.3e-55 211.5
Cone10ag0745 . 1 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.8 1.8e-54 209.9
Cone10ag1432 . 22 217 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.7 4.1e-54 208.8
Cone3ag1500 . 22 218 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.4 9.1e-54 207.6
Cone13ag0228 . 36 194 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Cone19ag0213 . 36 194 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Cone13ag0228 . 41 193 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.5 4.2e-37 152.1
Cone19ag0213 . 41 193 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.5 4.2e-37 152.1
Cone19ag0213 . 36 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.4 6.5e-80 294.7
Cone13ag0228 . 36 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 79.9 1.1e-79 293.9
Cone3ag1500 . 72 232 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.4 9.8e-52 201.1
Cone10ag1432 . 72 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.9 2.4e-50 196.4
Cone3ag0756 . 71 239 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.2 1.1e-47 187.6
Cone1ag1761 . 62 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 59.5 3.3e-47 186.0
Cone10ag0745 . 79 180 CCAAT-HAP5 Transcription Factor Family AT5G63470 84.3 6.8e-45 178.3
Cone10ag1432 . 33 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 6.8e-64 241.1
Cone3ag1500 . 47 201 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.9 4.4e-63 238.4
Cone10ag0745 . 50 208 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.0 5.1e-51 198.4
Cone3ag0756 . 71 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.6 4.3e-50 195.3
Cone13ag0228 . 36 159 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cone19ag0213 . 36 159 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cone1ag1761 . 62 178 CCAAT-HAP5 Transcription Factor Family AT1G56170 80.3 1.2e-49 193.7
Cone1ag0827 . 1 299 CCAAT-HAP5 Transcription Factor Family AT3G12480 52.3 7.2e-62 235.0
Cone5ag0992 . 1 297 CCAAT-HAP5 Transcription Factor Family AT3G12480 53.6 6.1e-61 231.9
Cone12ag0815 . 4 128 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.8 1.9e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45821 None None None None Cone TF