Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag0756 | ATGGACCAGCAAGGGCATAACCAAAGTCCATCAATGGGGGTAGTCGGCAGTGGTCCCCAATTGCCATACGGAACTAATTTTTACCAACCTACTCAAATGACTGGAATGCCCCCAGGTCAACCTAGTGGGCCCCCTTATTCTCAACACCAGCTCGCTTACCAACACATCCACCAGCAACAACAGCAGCAACTCCAACAGCAGCTCCAAAATTTTTGGGCCAATCAGTACCAAGAAATTGAACGAGTGACCGATTTCAAGAACCATAGCCTTCCCTTAGCAAGGATCAAGAAGATCATGAAAGCTGATGAGGATGTAAGAATGATATCAGCTGAGGCGCCTGTCATATTTGCTCGAGCTTGTGAGATGTTCATCTTGGAGTTGACTTTAAGGTCTTGGAATCACACAGAAGAGAATAAGAGGAGGACCCTTCAGAAGAATGATATTGCGGCAGCTATTACGAGGACTGATATCTTTGACTTTTTGGTTGATATTGTGCCAAGGGAGGATTTGAAGGATGAAGTGTTGACTTCGATTCCGAGAGGAACAGTTCCGGTTGGGGGGGCGGCGGATGCAATGTCATATTACCACATGCCACCTCAACATGGGCCTCCTCCTCAGGTTGCTCCTCCCGGGATGATGATGGGTAAGCCTCTTATGGATCAATCGATGTATGCTCAGCAGCCTCCTCATGCATACTTGTCCCCGCAAATGTGGCAGCCACCTCCACCTGATCAACAGCCATCTCCTTCTGATCATTAA | 759 | 47.96 | MDQQGHNQSPSMGVVGSGPQLPYGTNFYQPTQMTGMPPGQPSGPPYSQHQLAYQHIHQQQQQQLQQQLQNFWANQYQEIERVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGTVPVGGAADAMSYYHMPPQHGPPPQVAPPGMMMGKPLMDQSMYAQQPPHAYLSPQMWQPPPPDQQPSPSDH | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 3923223 | 3925606 | + | Conep03aG0077900.1 | Cone3ag0756 | 434215 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag0756 | 252 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cone3ag0756 | 252 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Cone3ag0756 | 252 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 61 | 186 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
| Cone3ag0756 | 252 | FunFam | Nuclear transcription factor Y subunit gamma | 54 | 167 | - | - | |
| Cone3ag0756 | 252 | Pfam | Core histone H2A/H2B/H3/H4 | 49 | 152 | IPR007125 | GO:0003677(InterPro) | |
| Cone3ag0756 | 252 | SUPERFAMILY | Histone-fold | 57 | 161 | IPR009072 | GO:0046982(InterPro) | |
| Cone3ag0756 | 252 | MobiDBLite | consensus disorder prediction | 234 | 252 | - | - | |
| Cone3ag0756 | 252 | Gene3D | Histone, subunit A | 51 | 167 | IPR009072 | GO:0046982(InterPro) | |
| Cone3ag0756 | 252 | MobiDBLite | consensus disorder prediction | 217 | 252 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag1761 | Cone-Chr1:58245827 | Cone3ag0756 | Cone-Chr3:3923223 | 1.69E-88 | dispersed | |
| Cone3ag0756 | Cone-Chr3:3923223 | Cone3ag1500 | Cone-Chr3:33585649 | 8.69E-69 | dispersed | |
| Cone10ag0745 | Cone-Chr10:3757038 | Cone3ag0756 | Cone-Chr3:3923223 | 8.88E-112 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45821 | None | None | None | None | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag0756 | K08066 | - | vvi:100258035 | 310.457 |