Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0792 ATGGCTGATTATGATCAAGAGAAGTTGCTTCCCGTGGCCAATGTGGGGAGAATCATGAAGCAAATCCTTCCCTCAAGTGCAAAGATTTCCAAGGAAGCCAAACAAACGATGCAAGAATGTGCTACAGAATTCATAAGCTTTGTGACTGGTGAAGCATCCAACAAGTGTCACAAGGAGAATCGCAAGACGGTGACGGGTGACGACATCTGTTGGGCTTTGAGCACTCTAGGGCTTGACAATTATGCTGAGGCCATCATAAGGTACTTGTATAAATATAGAGAAGCGAAAGCTAATAGTACAAATAAAGGCAGCAATGCTCAAGAAAGAGAAGAAGATGATCAAGAGGATGACAGCGACAACTAA 363 43.25 MADYDQEKLLPVANVGRIMKQILPSSAKISKEAKQTMQECATEFISFVTGEASNKCHKENRKTVTGDDICWALSTLGLDNYAEAIIRYLYKYREAKANSTNKGSNAQEREEDDQEDDSDN 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4075231 4075593 - Conep03aG0081500.1 Cone3ag0792 434251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0792 120 Gene3D Histone, subunit A 2 120 IPR009072 GO:0046982(InterPro)
Cone3ag0792 120 SUPERFAMILY Histone-fold 6 115 IPR009072 GO:0046982(InterPro)
Cone3ag0792 120 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Cone3ag0792 120 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Cone3ag0792 120 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Cone3ag0792 120 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 112 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone3ag0792 120 MobiDBLite consensus disorder prediction 97 120 - -
Cone3ag0792 120 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 73 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0792 Cone-Chr3:4075231 Cone5ag0958 Cone-Chr5:4086566 5.28E-50 dispersed
Cone10ag0770 Cone-Chr10:3905216 Cone3ag0792 Cone-Chr3:4075231 4.57E-66 wgd
Cone14ag0770 Cone-Chr14:4418786 Cone3ag0792 Cone-Chr3:4075231 1.35E-40 wgd
Cone20ag0927 Cone-Chr20:6668636 Cone3ag0792 Cone-Chr3:4075231 8.58E-43 wgd
Cone3ag0792 Cone-Chr3:4075231 Cone5ag0034 Cone-Chr5:205068 1.84E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45823 PF02458 Transferase 9.40E-116 CL0149 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0792 K08065 - mdm:103423558 167.548