Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0793 ATGAGTATAAGTGGTAGTGAAGATGGGAGCGTTTCTAATTCCGAAAACCACTGCGAATTTGAAGGTGATCAACAAGTAGTACTGAAAAAAGATGATCAAGTGGAGATGATGATGATCAATCCATTTCATGGATCAAATTCCTTCTCAGCAACTTCTACTAATACTACTACTTCCACTAAGAAGAAAAGGAGCTTACCAGGAAATCCTGACCCGAATGCAGAAGTGATTGCGCTTTCCCCGAAGATGCTAATGGCGAAGAACCGATTCGTGTGTGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAACCTACAACTTCATAGGAGAGGGCATAATCTGCCATGGAAGCTGAAGCTAAGAGCAAGTAATGAACTGAACAGGAAGAAAGTATACGTCTGTCCGGAACCCTCATGTGTTCATCACAATCCAGGTAGGGCATTGGGTGATCTTACAGGAATCAAGAAGCATTTCTCTAGAAAACATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAGAAATATGCTGTTCAATCTGACTGGAAAGCTCATTCCAAGACTTGTGGTAGTAGAGAGTACAAATGTGATTGTGGCACTATCTTCTCCAGGAGAGATAGTTTTATAACTCACAGAGCATTCTGTGATGCCTTAGTAAGTGAAGAAAACAAGAACAGAGCAAGTCAACATGACCATGGAGAGCAAGTTTCTCGTATGATAGAAGAGCCAAGACTAAACATAGAAAGCAGCCAGTTACAATCTCATGATCTTCTAATGTCACAACTAATACCACTCATGAGCAGCAGCACCAATCAAAATCCCTCAAAATCAGGCAAATTAAGCATTTTCCCAAGTAGAACAAATAATAGTATCAGTAACAATGTGTCATCATCATCAGCAGTAACAGCAACAAAAAATATGTTTGAAGCAAAACTGGGACTTGACCAATTGATATCAAGTCCAAGAAGCAGCCTCCTTTACTCAGCCACAGCGCTTCTTCAAAAAGCAGCTCAAATGGGTGCAGCTGTGAGTACTAGTGCTAGTAATGCTACTTCTACAAGCATTATGGCACCTTCTTCATTTGGTAGTCATGGATTGTTAATGTCTCAAAATAACCAACCTATAGAAGGTACCATGTCGGATCATCATTTTTTCGATATGAATATGGGGTCAGGAGCTTTTAATGGGTTATTTGGTAGTCAAGATGATCAGAAGTACAACGATATCAAGTTTTTGAAGGATGTGAAGAATTTGAGCAATAATGTTTGCAGTAGTAGTACTAATGATGATCATCATGAGGGGTTTTTGCATTGCGTAAATCCAAATGGGGGGTCAATGACATTGGATTTGTTGGGGAATGAAGGAGTAAGTTACCATGGCTCGGAATCTTTCCGGGACGGAGGATTTTAG 1407 40.3 MSISGSEDGSVSNSENHCEFEGDQQVVLKKDDQVEMMMINPFHGSNSFSATSTNTTTSTKKKRSLPGNPDPNAEVIALSPKMLMAKNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRASNELNRKKVYVCPEPSCVHHNPGRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGSREYKCDCGTIFSRRDSFITHRAFCDALVSEENKNRASQHDHGEQVSRMIEEPRLNIESSQLQSHDLLMSQLIPLMSSSTNQNPSKSGKLSIFPSRTNNSISNNVSSSSAVTATKNMFEAKLGLDQLISSPRSSLLYSATALLQKAAQMGAAVSTSASNATSTSIMAPSSFGSHGLLMSQNNQPIEGTMSDHHFFDMNMGSGAFNGLFGSQDDQKYNDIKFLKDVKNLSNNVCSSSTNDDHHEGFLHCVNPNGGSMTLDLLGNEGVSYHGSESFRDGGF 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4085646 4087816 + Conep03aG0081600.1 Cone3ag0793 434252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0793 468 MobiDBLite consensus disorder prediction 41 71 - -
Cone3ag0793 468 Gene3D Classic Zinc Finger 88 112 - -
Cone3ag0793 468 SUPERFAMILY beta-beta-alpha zinc fingers 88 186 IPR036236 -
Cone3ag0793 468 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 165 189 - -
Cone3ag0793 468 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Cone3ag0793 468 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Cone3ag0793 468 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 49 454 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone3ag0793 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Cone3ag0793 468 MobiDBLite consensus disorder prediction 1 20 - -
Cone3ag0793 468 Gene3D Classic Zinc Finger 142 225 - -
Cone3ag0793 468 FunFam protein indeterminate-domain 12-like 68 137 - -
Cone3ag0793 468 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 127 161 - -
Cone3ag0793 468 MobiDBLite consensus disorder prediction 41 65 - -
Cone3ag0793 468 MobiDBLite consensus disorder prediction 1 23 - -
Cone3ag0793 468 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Cone3ag0793 468 SMART c2h2final6 131 161 IPR013087 -
Cone3ag0793 468 SMART c2h2final6 166 186 IPR013087 -
Cone3ag0793 468 SMART c2h2final6 89 111 IPR013087 -
Cone3ag0793 468 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 192 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1273 Cone-Chr13:9597910 Cone3ag0793 Cone-Chr3:4085646 1.42E-98 dispersed
Cone3ag0793 Cone-Chr3:4085646 Cone7ag1220 Cone-Chr7:9051517 6.99E-95 dispersed
Cone11ag0858 Cone-Chr11:7118979 Cone3ag0793 Cone-Chr3:4085646 3.27E-94 transposed
Cone10ag0771 Cone-Chr10:3915018 Cone3ag0793 Cone-Chr3:4085646 6.02E-293 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45824 PF04130 GCP_C_terminal 7.70E-65 CL0540 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0793 - - - 0.0