Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0815 ATGAATTTCGGGGACAGTACTGGGAAAAAGAAGTATGCACTTTTTGGTGTTTCTGCCGTTTTGCTCGTGGCTGCGGTTTTAGCTGTGACAGTGATGGTTACGCGTAAGCCCAACGAAACCAACAAATCCAAAGAGATATCATCCTCAGTGAAATCAATTGAAGCCATTTGCCAACCTACAGATTACAAAGAAGAATGCATAAAGAGCTTGGAATCTTCGTCTGGAAAAACTGACGACCCGAAAGAACTCATCCGGACCAGCTTCAAAGTTACCGTGAAGTACATCAATGAGGCAGCCAAAAAATCCATCACCTTGAAACAGGTAGAGAAAGATCCGAGAACGGCCCAGGCGCTCGGTACCTGCAAAGAGCTGGCAAACTATGCGGTTCGCCAACTTAAACAATCATTCGACAGGTTGGGAGATTTTGATGTTGCCCAGATCGACGAAATGCTGTTGGACTTAAAGACATGGCTCACTTCTAGCATGACATATCAAGAGACATGCTTGGAAGGGTTCCAAAACACCACTGGTGATGCTGGGGAGAAAATGAGGGCGGCCCTTCAGACATCAATGCATCTCACGAGCAATGGCCTTGCCATGGTTACGGAGATCTCAGCAGCATTGACCGGCATTCCGACTTCTAATGGCCGCCGCCTTCTTTCGGAAGATTTCAAAGTTCTAGGCCATGACAAGTTCGATATTATGCCAGATTGGGTCAATCCGATGGGCCGGAGACTGCTTTATGTGTCTGGGTCGAATGTCAAGCCGAACGTTGTCATAGCCTTGGACGGAACCGGACAGTTCAAGACCATCCACGAGGCATTGAAACTAGTCCCAGTTGGTAATAAGAAACCCTTTGTGATATACATCAAGGAGGGTGTGTATAAAGAATATGTTAGAGTTCAAGTGGGAGTTGATCATGTTGTTTTTATTGGCGATGGCCCAAAAAAGACCCGAATAACTGGAAAAAATAATTACGTCGACGGCTTAGCTACCTACAAAACTGCAACAGTCGCCATTTTTGGAAACTCATTCATGGCTATGAATATCGGGTTTGAGAACACGTCCGGTCCAAAGAAACACCAAGCCGTGGCATTGTTGGTCCAATCCGACAATTCCGTGTTCTACAACTGTGCAATGGATGGATACCAGGACACCCTCTACGTCCATACCAACCGTCAGTTCTACCGTGACTGCACCATTTCCGGAACCATCGACTTTGTGTTCGGAAATGCAGCCGCAATCTTCCAAAACTGCAAGTTCTTGATCCGGAAGCCACTAAAAAACCAACAAACCATCGTCACGGCCCACGGCCGAACTGAACGACGTCAAGCATCGGCATTGGTCCTACAAAATTGCACCATCACGTCCGATCCCGAGTTCTACCTGGTTCGGAAAAATTTCAAGTCCTTCCTTGGCCGGCCGTGGAACCAATATTCAAGGACAATAATCATGGAGTCATTCATCGATGATGTCATCGAGCCCGAAGGTTGGATGTCTTGGATTGGAAATGCCGGGCTTAATACCTGTTTCTATGCGGAAGTTAATAATAGGGGTCCTGGCTCAGATAAGACGAAGAGGGTAACTTGGCGGGGAATCAGAAATATTACGGCTAAACATGCGGTTAAATTCACGGCTGGAAGGTTTGTTTTCGGTGATTTGTGGATTAAGCCGACCGGAGTGCCTTACACTTCTGGTATGATTACTGCTGCTACAGCTTAG 1722 46.69 MNFGDSTGKKKYALFGVSAVLLVAAVLAVTVMVTRKPNETNKSKEISSSVKSIEAICQPTDYKEECIKSLESSSGKTDDPKELIRTSFKVTVKYINEAAKKSITLKQVEKDPRTAQALGTCKELANYAVRQLKQSFDRLGDFDVAQIDEMLLDLKTWLTSSMTYQETCLEGFQNTTGDAGEKMRAALQTSMHLTSNGLAMVTEISAALTGIPTSNGRRLLSEDFKVLGHDKFDIMPDWVNPMGRRLLYVSGSNVKPNVVIALDGTGQFKTIHEALKLVPVGNKKPFVIYIKEGVYKEYVRVQVGVDHVVFIGDGPKKTRITGKNNYVDGLATYKTATVAIFGNSFMAMNIGFENTSGPKKHQAVALLVQSDNSVFYNCAMDGYQDTLYVHTNRQFYRDCTISGTIDFVFGNAAAIFQNCKFLIRKPLKNQQTIVTAHGRTERRQASALVLQNCTITSDPEFYLVRKNFKSFLGRPWNQYSRTIIMESFIDDVIEPEGWMSWIGNAGLNTCFYAEVNNRGPGSDKTKRVTWRGIRNITAKHAVKFTAGRFVFGDLWIKPTGVPYTSGMITAATA 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4194970 4196774 - Conep03aG0084300.1 Cone3ag0815 434274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0815 573 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Cone3ag0815 573 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Cone3ag0815 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 204 IPR035513 -
Cone3ag0815 573 SUPERFAMILY Pectin lyase-like 253 566 IPR011050 -
Cone3ag0815 573 SMART PMEI_2 48 200 IPR006501 GO:0004857(InterPro)
Cone3ag0815 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 205 IPR035513 -
Cone3ag0815 573 FunFam Pectinesterase 49 205 - -
Cone3ag0815 573 Pfam Pectinesterase 257 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone3ag0815 573 PANTHER PECTINESTERASE 11 558 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone3ag0815 573 Pfam Plant invertase/pectin methylesterase inhibitor 51 200 IPR006501 GO:0004857(InterPro)
Cone3ag0815 573 Gene3D - 250 567 IPR012334 -
Cone3ag0815 573 CDD PMEI-like_3 55 206 - -
Cone3ag0815 573 FunFam Pectinesterase 251 567 - -
Cone3ag0815 573 NCBIfam pectinesterase inhibitor domain 25 203 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0815 Cone-Chr3:4194970 Cone7ag0832 Cone-Chr7:6238440 4.43E-127 dispersed
Cone10ag0794 Cone-Chr10:4035649 Cone3ag0815 Cone-Chr3:4194970 1.11E-09 wgd
Cone14ag0748 Cone-Chr14:4183617 Cone3ag0815 Cone-Chr3:4194970 6.01E-198 wgd
Cone15ag0754 Cone-Chr15:4429604 Cone3ag0815 Cone-Chr3:4194970 3.83E-225 wgd
Cone20ag0959 Cone-Chr20:6855559 Cone3ag0815 Cone-Chr3:4194970 2.71E-95 wgd
Cone3ag0815 Cone-Chr3:4194970 Cone4ag0137 Cone-Chr4:626754 2.73E-200 wgd
Cone3ag0815 Cone-Chr3:4194970 Cone5ag0054 Cone-Chr5:269828 2.19E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0815 K01051 - csv:101207393 694.501