Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0822 ATGGGCCACTTTTCGTCCATGTTCAATGGACTGGCAAAGTCACTTTCTATGAAAAAGGGAAGAAATTCCGAGAAGTCGAGAAATCTTGATGGAAGAGAAGCTGCAGAAGAGATGGCCAAGGCTGCAAAGAAGAAAGACTTAATATTAAGAAATTCTGGCGTTGTAAATGTAGACGGTTCAAACAATTTGACCTCAGTTTTTTCGAAAAGAGGCGAAAAGGGAGTGAACCAAGATTGCTGCATTGTCTGGGAGGAATTTGGGGGTCAAGAGGATATGTTGTTTTGTGGGATATTTGATGGGCATGGACCGTGGGGGCATTTTGTTGCGAAAACAGTTAGGGAATCGATGCCGCCATCTCTGTTATGCAATTGGCAAGAAGCACTTGCTCAAACCTCACTTGATTCGGATTTGGACTTAGAAAAGAAGTGCCAAAGGTTCAATATTTGGAAGCATTCCTACATAAGAACTTGTGCTGCTATTGATCAAGAACTTGAGCAGCATCGCAAGATCAATTCGTTTTATAGCGGCACAACTGCCCTTTCTATAGTCCGACAGGGTGAAATGATAGTAATAGCTAATGTTGGTGATTCCCGGGCCGTTTTGGCTACGATTTCAGATGATGGAAGTGTTGTCCCAGTTCAACTAACTATGGATTTCAAGCCCAACTTACCTCAAGCTGAGAGAATAATTCAGTGCAATGGGAGGGTGTTCTGCTTAGAAGACGAGCCGGGGGTTCACCGAGTATGGCTACCAGACCAGGAATCACCTGGACTGGCCATGTCTAGAGCATTTGGAGACCATTGTGTCAAAGATTTTGGACTCATTTGCTTGCCAGAAGTTACACACAGAAGTATCACGAGCCGGGACATATTTGTTGTCCTTGCAACTGATGGGGTATGGGATGTTGTATCCAATGAAGAGGCAGTACGAATAGTAGGTTCCACGGAAGACCGAGCAAAAGCGGCGAAGCGTCTGGTCGAGTGTGCAGTTCGTGGATGGGAAAGGAAGAGGAGAGGGATTGCTATGGATGATATCTCTGCTATTTGTCTCTTCTTCCACTCTTCTTCTTCTTCTTCCTCCTCACAAATTCACTCATTTTCAAACAGTTAA 1110 44.41 MGHFSSMFNGLAKSLSMKKGRNSEKSRNLDGREAAEEMAKAAKKKDLILRNSGVVNVDGSNNLTSVFSKRGEKGVNQDCCIVWEEFGGQEDMLFCGIFDGHGPWGHFVAKTVRESMPPSLLCNWQEALAQTSLDSDLDLEKKCQRFNIWKHSYIRTCAAIDQELEQHRKINSFYSGTTALSIVRQGEMIVIANVGDSRAVLATISDDGSVVPVQLTMDFKPNLPQAERIIQCNGRVFCLEDEPGVHRVWLPDQESPGLAMSRAFGDHCVKDFGLICLPEVTHRSITSRDIFVVLATDGVWDVVSNEEAVRIVGSTEDRAKAAKRLVECAVRGWERKRRGIAMDDISAICLFFHSSSSSSSSQIHSFSNS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4221977 4225099 + Conep03aG0085000.1 Cone3ag0822 434281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0822 369 ProSiteProfiles PPM-type phosphatase domain profile. 63 352 IPR001932 -
Cone3ag0822 369 MobiDBLite consensus disorder prediction 18 36 - -
Cone3ag0822 369 Pfam Protein phosphatase 2C 87 330 IPR001932 -
Cone3ag0822 369 PANTHER PROTEIN PHOSPHATASE 38 351 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone3ag0822 369 Gene3D - 54 355 IPR036457 -
Cone3ag0822 369 SMART PP2C_4 55 350 IPR001932 -
Cone3ag0822 369 FunFam Probable protein phosphatase 2C 34 54 354 - -
Cone3ag0822 369 CDD PP2Cc 65 350 IPR001932 -
Cone3ag0822 369 MobiDBLite consensus disorder prediction 16 36 - -
Cone3ag0822 369 SUPERFAMILY PP2C-like 63 353 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0822 Cone-Chr3:4221977 Cone5ag0943 Cone-Chr5:4036801 1.99E-102 dispersed
Cone10ag0799 Cone-Chr10:4059328 Cone3ag0822 Cone-Chr3:4221977 1.12E-244 wgd
Cone14ag0746 Cone-Chr14:4163280 Cone3ag0822 Cone-Chr3:4221977 1.97E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0822 - - - 0.0