Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0826 ATGGCAACTAGGAATCGGACTTTGCTTTATAGGAAATATAGAGATGCGTTGAAGAGCGTAAGAGTTCCGGCGAGCTCTTCGTCAGCTTCCGCCGCATCTTCGTCGAGAAGTCAGGGAGCTGGTGGTCCGGTGATCGAAATGGTCAGCACTTCGCTTTTGAATCCGAATCGATCTTATACTCCACTCAGTACCGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACTGTGGGCTTACCTCCTGCTTGGGTGGATTTATCTGAAGAAATAACATCGAATGTTCAACGGGCACGGTTAAAAATGGCTGAGTTAGCCAAAGCTCATTCAAAGGCTCTAATGCCTTCATTTGGGGATGGAAAAGAAGATCAACAATTGATTGAATCTCTTACACAAGAGATAACTAATCTGATAAGGAAATCGGAGAAGAGATTGCAGAGACTCTCTGCAGCTGGACCTTCTGAGGATTCAAATGTTAGAAAAAATGTGCAGCGGTCACTTGCAACTGACCTTCAAACACTTTCAATGGAGCTGCGCAAGAAACAATCGGTTTACTTGAAGAGGCTCAGGCAACAAAAGGAGGGTCAAGATGGGGTTGATTTAGAGATGAATCTAAATGGAAATAGATCTGGAACAGAGGATGATGAATTAGACAACATGGTATTCAGTGAGCATCAGATGGCCAAGCTTAAAAAGAGTGAAGCATTTACAGCAGAAAGGGAAAGAGAGATCCAACAGGTTGTAGAGTCTGTAAATGAGCTTGCCCAGATAATGAAGGATTTATCAGTACTCGTAATAGACCAGGGAACCATTGTTGATAGGATTGACCACAATATTCAAGCTGTTGCAACTACAGTTGATGACGGCCTTAAGCAGCTAGAAAAGGCTGAGAGAACACAGAAGAAAGGGGGAATGGTAATGTGTGCATCTGTGCTTATTGTTATGTGTTTGGTCATGTTGGTCCTCCTGATTCTTAAGGAGATATTCTTTTGA 990 43.13 MATRNRTLLYRKYRDALKSVRVPASSSSASAASSSRSQGAGGPVIEMVSTSLLNPNRSYTPLSTEDPGNSSKGALTVGLPPAWVDLSEEITSNVQRARLKMAELAKAHSKALMPSFGDGKEDQQLIESLTQEITNLIRKSEKRLQRLSAAGPSEDSNVRKNVQRSLATDLQTLSMELRKKQSVYLKRLRQQKEGQDGVDLEMNLNGNRSGTEDDELDNMVFSEHQMAKLKKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDHNIQAVATTVDDGLKQLEKAERTQKKGGMVMCASVLIVMCLVMLVLLILKEIFF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4239376 4242748 + Conep03aG0085400.1 Cone3ag0826 434285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0826 329 Coils Coil 87 107 - -
Cone3ag0826 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Cone3ag0826 329 Pfam SNARE domain 269 321 IPR000727 -
Cone3ag0826 329 SMART tSNARE_6 228 295 IPR000727 -
Cone3ag0826 329 PANTHER SYNTAXIN 90 316 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone3ag0826 329 SUPERFAMILY t-snare proteins 79 288 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone3ag0826 329 Gene3D - 80 287 - -
Cone3ag0826 329 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone3ag0826 329 SMART SynN_4 74 189 IPR006011 GO:0016020(InterPro)
Cone3ag0826 329 CDD SNARE_syntaxin16 237 294 - -
Cone3ag0826 329 MobiDBLite consensus disorder prediction 24 40 - -
Cone3ag0826 329 MobiDBLite consensus disorder prediction 24 43 - -
Cone3ag0826 329 FunFam Syntaxin-43 80 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0442 Cone-Chr17:2078757 Cone3ag0826 Cone-Chr3:4239376 1.81E-147 dispersed
Cone10ag0804 Cone-Chr10:4080924 Cone3ag0826 Cone-Chr3:4239376 2.90E-197 wgd
Cone20ag0971 Cone-Chr20:6911166 Cone3ag0826 Cone-Chr3:4239376 1.24E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0826 K08489 - cit:102612546 519.235