Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0846 ATGGCTATAGGATCCCCTGGGCAGCTCAACCTAACTGAGACCCCCTCATGGGGATCTAGAAGCGTCGATTGCTTCGAAAAATTGGAACAGATTGGCGAGGGAACTTATGGTCAAGTTTACATGGCCAGAGAAATAAAGACTGGAGAAATTGTTGCTTTGAAGAAGATACGGATGGACAATGAGAGAGAGGGGTTTCCTATTACTGCCATACGAGAAATCAAAATCCTAAAAAAGCTGCATCATGAAAATGTAATAAAGCTGAAAGAGATTGTGATGTCACCAGGTCCTGAGAAAGATGAGCAGGGAAAACCAGATGGGAACAAGTATAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTTCTGATCGTCCTGGTATGAGATTTTCAGTTCCTCAGATTAAGTGTTACATGAAACAGCTTTTGACTGGGCTTTATTACTGCCATGTAAATCAAGTACTACATCGGGATATCAAAGGCTCTAATCTTCTTATAGACAATGAAGGAAATTTGAAGCTTGCAGATTTTGGGCTTGCTCGATCGTTCTCTAATGATCACAATGCTAATCTCACAAACCGTGTAATTACTTTGTGGTATAGACCTCCAGAGTTGTTGCTTGGGACAACAAGGTATGGCCCCGCTGTTGATATGTGGTCCGTTGGTTGTATCTTTGCTGAGCTTCTTCATGGGAAACCAATTTTCCCAGGTAAAGATGAGCCCGAGCAGTTAAATAAGATCTTTGAGCTGTGTGGAGCTCCTGATGAGGTTAATTGGCCTGGGGTCTCCAAGATTCCTTGGTATAACAATTTCAAACCTACAAGGCCGATGAAGAGACGACTTAGAGAGGTCTTCAGAAATTTTGAACGGCATGCTTTAGAGTTGTTGGAGAGGATGCTGATTCTTGATCCCTCTCAGAGGATATCTGCAAAAGACGCCCTTGATGCTGAGTACTTTTGGACTGACCCATTACCATGTGATCCCAAGAGTTTACCCAAATACGAATCATCCCACGAGTTCCAAACCAAGAAGAAGCGGCAGCAGCAAAGACAACAGGAAGAAAATGCAAAACGCCAGAAATTGCAACACCCACAGCAACACACCCGCCTTCCGCCAATCCAGCAGTCGGGTCAAGCCCATGCCCAGTTACGGCCTGGTGCAAACCAGCCATTTCATAGCTCTCAACCCCAGGTTGCTGCTGGAGGCCCTGGTGGTCACCATTTTGGGAAGCCTCGCGGTGGACCCTCGGGTGGGCCGGGCCGATATCCAGCGAGCGGAAATCCTGCTGGAGGATACAACCACCCTAGTCGTGGTGGTCAAGGTGGTGGTAGTGGTTATGGCGGAAGTGGCCAGTATCCTCAGGGTGGTGGTCGAGGTGCACCCTATGGCTCTAGTGGTATGAGTGGTGCGGGGCCCAGGGTTGGGGGAGGGAGCGGGTATGGAGTTGGTGCTCCGCCAAACTACCCTCAAGGTGGTCCTTATGGTGGTTCTAGTGGTGGTGGTGGCCGTGGGTCAAACATGATGAGCAGAAACCGGAACCCACAATATGGATGGCAGCAGTAA 1578 47.97 MAIGSPGQLNLTETPSWGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVMSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLSDRPGMRFSVPQIKCYMKQLLTGLYYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRNFERHALELLERMLILDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQQEENAKRQKLQHPQQHTRLPPIQQSGQAHAQLRPGANQPFHSSQPQVAAGGPGGHHFGKPRGGPSGGPGRYPASGNPAGGYNHPSRGGQGGGSGYGGSGQYPQGGGRGAPYGSSGMSGAGPRVGGGSGYGVGAPPNYPQGGPYGGSSGGGGRGSNMMSRNRNPQYGWQQ 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4340825 4345376 + Conep03aG0087600.1 Cone3ag0846 434305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0846 525 SUPERFAMILY Protein kinase-like (PK-like) 19 332 IPR011009 -
Cone3ag0846 525 FunFam Cyclin-dependent kinase C-2 12 121 - -
Cone3ag0846 525 MobiDBLite consensus disorder prediction 507 525 - -
Cone3ag0846 525 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Cone3ag0846 525 MobiDBLite consensus disorder prediction 337 366 - -
Cone3ag0846 525 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Cone3ag0846 525 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0846 525 MobiDBLite consensus disorder prediction 370 401 - -
Cone3ag0846 525 FunFam Cyclin-dependent kinase C-2 122 364 - -
Cone3ag0846 525 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Cone3ag0846 525 CDD STKc_CDK9_like 25 324 - -
Cone3ag0846 525 SMART serkin_6 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0846 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0846 525 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0846 525 MobiDBLite consensus disorder prediction 335 525 - -
Cone3ag0846 525 PANTHER CELL DIVISION PROTEIN KINASE 25 324 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0408 Cone-Chr1:3554336 Cone3ag0846 Cone-Chr3:4340825 2.72E-296 dispersed
Cone3ag0846 Cone-Chr3:4340825 Cone5ag1291 Cone-Chr5:7206336 1.70E-126 dispersed
Cone10ag0820 Cone-Chr10:4167407 Cone3ag0846 Cone-Chr3:4340825 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82684 PF07714 PK_Tyr_Ser-Thr 1.00E-22 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0846 K08819 - mdm:103435440 845.499