Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag0872 | ATGGATTATAGGGGGTATAATGGAAGACTGGCAAATAGTCAAGATAGGCGTCAGTATGAAAGAGAACAGGTATATCAGGAGTCTCTTATTGGGGAATTGGCCGAGGATTTTTGCCTGCCAATTAATCACAAGCCAACAGAAAATGTTGATCTTGATAATGTAGAGCAAGCCTCATTAGACACACAATTGACTTCATCTAATATTGGGTTTAGGCTTCTCCAGAAAATGGGCTGGAAAGGGAAGGGTCTAGGAAAAGATGAGCAAGGAATAACTGAGCCAATTAAATCAGGGATTAGAGATCCAAAATTAGGAGTCGGGAAACAAGAAGAAGATGACTTTTTCACTGCAGAAGAAAATATTCAGCGCCGAAAACTCGATGTTGAGCTAGAGGAAACTGAGGAACATGCAAAGAAGCGGGAGGTCTTAGCAGAACGTGAGCAAAAAATTCAGTCAGAGGTCAAGGAGATACAAAAGGTGTTCTATTGTGATCTTTGCAACAAACAATACAAGTTGGCTGTGGAGTTTGAAGCTCATCTTAGCTCATATGATCACAACCATAGAAAGCGTTTTAAAGAAATGAAAGAAATGCATGGTACAAGCAGTCGGGATGATCGACAAAAACGCGAACAACAACGTCAAGAGAGAGAGATGGCGAAATTTGCTCAACTTGTAGATGCTCACAAGCAGCAGCAGCAGCAGCAACTACGGCTACAAGAAGATTCAGGCTCTGCTCCTGTTTCCGCTGATCCGGGAAGTGCTACTGCAGTTGTAGATCAGGATCAACGCAAAGCATTGAAGTTTGGGTTCTCTTCTAAAGGCAGCACATCCAAGACCTCATTTGGCAGTGCTGCGAAAAAACCAAAAGTTGCCGTCACCTCGGTTTTTGGTAATGGCAGCGACGAAGAATAG | 909 | 42.9 | MDYRGYNGRLANSQDRRQYEREQVYQESLIGELAEDFCLPINHKPTENVDLDNVEQASLDTQLTSSNIGFRLLQKMGWKGKGLGKDEQGITEPIKSGIRDPKLGVGKQEEDDFFTAEENIQRRKLDVELEETEEHAKKREVLAEREQKIQSEVKEIQKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMKEMHGTSSRDDRQKREQQRQEREMAKFAQLVDAHKQQQQQQLRLQEDSGSAPVSADPGSATAVVDQDQRKALKFGFSSKGSTSKTSFGSAAKKPKVAVTSVFGNGSDEE | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4448625 | 4451707 | - | Conep03aG0090300.1 | Cone3ag0872 | 434331 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag0872 | 302 | MobiDBLite | consensus disorder prediction | 229 | 258 | - | - | |
| Cone3ag0872 | 302 | ProSiteProfiles | G-patch domain profile. | 65 | 110 | IPR000467 | GO:0003676(InterPro) | |
| Cone3ag0872 | 302 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 162 | 184 | IPR013087 | - | |
| Cone3ag0872 | 302 | MobiDBLite | consensus disorder prediction | 194 | 214 | - | - | |
| Cone3ag0872 | 302 | Pfam | G-patch domain | 66 | 106 | IPR000467 | GO:0003676(InterPro) | |
| Cone3ag0872 | 302 | PANTHER | FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED | 1 | 302 | - | - | |
| Cone3ag0872 | 302 | SMART | G-patch_5 | 63 | 108 | IPR000467 | GO:0003676(InterPro) | |
| Cone3ag0872 | 302 | MobiDBLite | consensus disorder prediction | 229 | 248 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag0934 | Cone-Chr1:54700331 | Cone3ag0872 | Cone-Chr3:4448625 | 6.66E-07 | dispersed | |
| Cone3ag0872 | Cone-Chr3:4448625 | Cone5ag0642 | Cone-Chr5:2740175 | 1.28E-06 | dispersed | |
| Cone1ag1742 | Cone-Chr1:58160481 | Cone3ag0872 | Cone-Chr3:4448625 | 1.37E-08 | transposed | |
| Cone10ag0843 | Cone-Chr10:4291270 | Cone3ag0872 | Cone-Chr3:4448625 | 7.58E-170 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag0872 | - | - | - | 0.0 |