Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0877 ATGGATCATCGAATCAAGATGTTTTCGGTGCTTGTTATTCTCGTACAACTTTCGCTTCTTGAAACAGCTCAACCATCTACTACTCAGGACTCGATCCTGCTAACAACTCTAATGCAAGAATGGGAGAACACTCCCCCTAACTGGGTTGGTTCAGATCCATGTGGTAGCAATTGGGATGGAATTACTTGCACCGATTCACGAATAACCTCCATAACATTACCTAGCGTCGGTCTGAAAGGACAGCTTTCTGGAGACATCGGATCATTGTCCGAGTTAACGACATTGGACCTATCTTACAACAGCGAACTGACCGGACCGCTTCCTGCATCTATTGGGAGTTTGACAAAGCTATCTAACTTAATCCTCATAGGGTGTAGATTTTCCGGTTCTATACCAGACACGATAGGATTGTTACAGCAGCTAAGATTTCTATCTCTAAATTTAAATCGGTTCAGTGGAAAAATCCCGGCTTCCATTGGTAGGCTGTCGAAACTTTATTGGCTGGACCTAGCTGATAATCAGCTTGATGGAACCATTCCAGTCTCTTCCGGCACCACCCCTGGTCTTGACTGGCTAGTTAAGACAAAGCATTTTCATTTTGGAAAGAATCGGCTATCAGGGGGAATTCCACCTGAACTCTTCAACCCAAATATGATACTGATACATGCGCTTTTCGAGAGTAATCAACTAATCGGCAGCATCCCTACCACCCTAGCATCTGTCAAGTCCTTGGAGGTGGTGCGCTTTGATCGGAACAACTTAAACGGGCCCGTGCCTTCAAATCTTAGCACTCTTACGAATGTTACCCATCTATCTCTGTCCAACAATAAGCTAACCGGACCATTACCCAACCTAACTGGGATGAATCAACTCAGCTCTTTAGACATGAGCAACAATAGTTTTGATGCATCTGATGTCCCATCATGGTTTTCAACCTTGACATCATTGACAACATTAACGATGGAAAACACACAACTTCAAGGACAAGTCCCGGCTTCTCTGTTCAGTCTTTCTAATTTGCAGACTGTAGTACTAAGCAGAAACAATCTGAATGGCTCATTGGATCTTGGAGCTTCAATCAGCACCAATCCGGGACTTATCGATATGCGGAATAATAAGATAACAGATGTTCTCAAAGAAGGATATAGCTCCACCTTAATACTTGTAGGCAACCCGGTTTGTCAAGAATCTGAAACAAAAGAGAGTTACTGCACAATTCCGGCCCCCAACTCCTCATACTATTCTACTCAACATAACAACTGCTTTCCCGTTTCATGTTACTCAAACGCGATTTCTAGCCCAAATTGTCAATGTGCATTCCCATATACAGGCACTCTAGTCTTCAGAGCCCCTTCTTTCTCTGACTTAGGAATATCGAGTAATTTTAAATCTCTTGAGACGCAACTCATTCATTCCTTTCAATCCAACAAGCTTCCAGTAGATTCCGTTGCCCTTTCCAATCCCTTCATGGATTCAGTTAACTACCTTAAAATACATTTATCAGTGTTTCCTTCTGGCGACGATCATTTCAATCGGACCTGGATTGCCAAAGTTGGATTTGTTCTAAGCAACCAGACTTTCAAGCCTCCTCTGAGTTTCGGACCGTTTTACTTCAATGCAGATGCATATCACTACAATACGGCTACCCGATCGAGCAAGTTGAGCAATAGTGTAATAATTGGAGCAGCCGTTGGTGGATCTCTCCTGGTGGTGTTATTAGTCATTGCAGGTTTATATGCTTTCCGCCAAAAAAGACGAGCAGAAAGGGCTACCGAACAGCAAAATCCTTTTGCACAATGGGATGTCATTAAGAACAGTGGTCCAGTTCCTCAATTAAAGGGAGCGAGATGGATCGCATTCGAAGAGCTGAAGAAATGCACCAATAATTTTGGAGTAGCAAATGATATCGGATCAGGTGGTTATGGGAAGGTTTATCGTGGGACACTTCCATCCGGACAGCTGGTTGCGATCAAACGAGCACAAAAGGAATCAGTGCAGGGCGGACTCGAGTTCAAAACCGAGATCGAACTCTTATCAAGAGTCCACCATAAGAACCTAGTTGACCTTCTCGGTTTTTGCTTTGAGCAAGGCGAACAAATGCTGGTGTATGAGTATGTTGCAAATGGTAATCTCAAGGATAGTCTTTCAGGGAAGTCTGGAATCAGGCTAGACTGGATGTGGAGACTTAAAATAGCAGGTGGTGCAGCCAGAGGGCTATTGTATCTTCATGAACTAGCCGACCCTCCTATAATACATAGGGACGTTAAATCGAATAACATTCTACTGGACGAGCATTTAAATGCAAAAGTTGCCGATTTTGGCCTCTCCAAACTTATGGCTGATTCTGACAGGGATCATGTCACCACTCAAGTCAAAGGAACAATGGGCTACTTGGACCCAGAATATTACATGACACAGCAGCTAACAGAGAAGAGTGATGTTTATGGCTTTGGCGTGGTAATGTTAGAGCTGATAACTGCAAGAAGGCCAATAGAGCGAGGCAAGTACATAGTGAGGGAGGTAAAGATGGCAATTGATAAAACGAAAGATCGATACAACCTGCAAGAAATTCTTGACCCGGCTATAAACAGGGAAACACTACAAGGGGTAGAAAAGTTTGTGGATCTAGCAATGAGCTGTTTAGAAGAATCAGGGGCTGAGAGGCCGACAATGGGTGAGGTGGTGAAAGAGATTGAGAGCATAATGGTGCTTGCCGGTTTGAATCCGAATGCTGATTTAGCATCCACGTCAGCAAATTATGATGAGGCAAGTAAGGGAAATCCAAAGAATCCTTATGGTAATGATGACTTTAGTTACAGCAGGGCCTTCCCGCCTGCAAAAGTAGAACCTCAGTAA 2856 43.63 MDHRIKMFSVLVILVQLSLLETAQPSTTQDSILLTTLMQEWENTPPNWVGSDPCGSNWDGITCTDSRITSITLPSVGLKGQLSGDIGSLSELTTLDLSYNSELTGPLPASIGSLTKLSNLILIGCRFSGSIPDTIGLLQQLRFLSLNLNRFSGKIPASIGRLSKLYWLDLADNQLDGTIPVSSGTTPGLDWLVKTKHFHFGKNRLSGGIPPELFNPNMILIHALFESNQLIGSIPTTLASVKSLEVVRFDRNNLNGPVPSNLSTLTNVTHLSLSNNKLTGPLPNLTGMNQLSSLDMSNNSFDASDVPSWFSTLTSLTTLTMENTQLQGQVPASLFSLSNLQTVVLSRNNLNGSLDLGASISTNPGLIDMRNNKITDVLKEGYSSTLILVGNPVCQESETKESYCTIPAPNSSYYSTQHNNCFPVSCYSNAISSPNCQCAFPYTGTLVFRAPSFSDLGISSNFKSLETQLIHSFQSNKLPVDSVALSNPFMDSVNYLKIHLSVFPSGDDHFNRTWIAKVGFVLSNQTFKPPLSFGPFYFNADAYHYNTATRSSKLSNSVIIGAAVGGSLLVVLLVIAGLYAFRQKRRAERATEQQNPFAQWDVIKNSGPVPQLKGARWIAFEELKKCTNNFGVANDIGSGGYGKVYRGTLPSGQLVAIKRAQKESVQGGLEFKTEIELLSRVHHKNLVDLLGFCFEQGEQMLVYEYVANGNLKDSLSGKSGIRLDWMWRLKIAGGAARGLLYLHELADPPIIHRDVKSNNILLDEHLNAKVADFGLSKLMADSDRDHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYGFGVVMLELITARRPIERGKYIVREVKMAIDKTKDRYNLQEILDPAINRETLQGVEKFVDLAMSCLEESGAERPTMGEVVKEIESIMVLAGLNPNADLASTSANYDEASKGNPKNPYGNDDFSYSRAFPPAKVEPQ 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4481877 4486658 + Conep03aG0090800.1 Cone3ag0877 434336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0877 951 Gene3D Phosphorylase Kinase; domain 1 601 705 - -
Cone3ag0877 951 SUPERFAMILY L domain-like 35 388 - -
Cone3ag0877 951 FunFam Leucine-rich repeat family protein 29 184 - -
Cone3ag0877 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0877 951 FunFam Leucine-rich repeat protein kinase family protein 595 705 - -
Cone3ag0877 951 ProSiteProfiles Protein kinase domain profile. 630 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0877 951 Pfam Leucine Rich Repeat 267 284 IPR001611 GO:0005515(InterPro)
Cone3ag0877 951 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Cone3ag0877 951 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Cone3ag0877 951 FunFam Leucine-rich repeat protein kinase family protein 185 284 - -
Cone3ag0877 951 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524(InterPro)
Cone3ag0877 951 Pfam Protein tyrosine and serine/threonine kinase 633 897 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0877 951 PANTHER RECEPTOR-LIKE PROTEIN 55 41 899 - -
Cone3ag0877 951 Gene3D Ribonuclease Inhibitor 185 283 IPR032675 -
Cone3ag0877 951 Gene3D Ribonuclease Inhibitor 27 184 IPR032675 -
Cone3ag0877 951 CDD STKc_IRAK 636 901 - -
Cone3ag0877 951 Gene3D Ribonuclease Inhibitor 284 419 IPR032675 -
Cone3ag0877 951 SUPERFAMILY Protein kinase-like (PK-like) 616 909 IPR011009 -
Cone3ag0877 951 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 706 914 - -
Cone3ag0877 951 Gene3D Transferase(Phosphotransferase) domain 1 706 909 - -
Cone3ag0877 951 SMART serkin_6 630 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0877 951 MobiDBLite consensus disorder prediction 915 951 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1462 Cone-Chr13:10439336 Cone3ag0877 Cone-Chr3:4481877 1.21E-235 dispersed
Cone19ag1467 Cone-Chr19:9518524 Cone3ag0877 Cone-Chr3:4481877 5.91E-277 dispersed
Cone3ag0877 Cone-Chr3:4481877 Cone3ag0879 Cone-Chr3:4502407 0 dispersed
Cone5ag0523 Cone-Chr5:2203847 Cone3ag0877 Cone-Chr3:4481877 3.79E-09 dispersed
Cone3ag0877 Cone-Chr3:4481877 Cone3ag0878 Cone-Chr3:4488336 0 tandem
Cone10ag0847 Cone-Chr10:4317044 Cone3ag0877 Cone-Chr3:4481877 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82685 PF00176 SNF2_N 1.50E-50 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0877 - - - 0.0