Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0878 ATGGATCATCGAATCAAGATGTTTTCGGTGCTTGTTATTCTCGTACAACTTTCGCTTCTTGAAACAGCTCAACCATCTACTACTCAGGACTCGATCCTGCTAACAACTCTAATGCAAGAATGGGAGAACACTCCCCCTAACTGGGTTGGTTCAGATCCATGTGGTAGCAATTGGGATGGAATTACTTGCACCGATTCACGAATAACCTCCATAACATTACCTAGCGTCGGTCTCAAAGGACAGCTTTCTGGAGACATCGGATCATTGTCCGAGTTAACGACATTGGACCTATCTTACAACAGCGAACTGACCGGACCGCTTCCTGCATCTATTGGGAGTTTGACAAAGCTATCTAACTTAATCCTCACAGGGTGTAGATTTTCTGGTTCTATACCAGACACGATAGGATCGTTACAGCAGCTAAGATTTCTATCTTTAAACTCAAATCGGTTCAGTGGAAAAATCCCGGCTTCCATTGGTAGGCTGTCGAAACTTTATTGGCTGGACCTAGCTGATAATCAGCTTGAAGGAACCATTCCGGTCTCTTCCGGCACCACCCCTGGTCTTGACTGGCTGGTTAAGACAGAGCATTTTCATTTCGAAAAGAATCGGCTATCAGGGGGAATTCCACCAAAACTCTTCAACCCGAATATGATACTGATACATGTGCTTTTCGAGAGTAATCAACTAATCGGCAACATCCCTACCACCGTAGCATCTGTAAAGTCCTTGGAGGTGGTGCGCTTTGATAGGAACAACTTAAACGGGTTTGTGCCTCCAAATCTCAGCACTCTTATAAATGTTACCCATTTATCTCTGTCCAACAATAAGCTAACCGGACCATTACCCAACCTAACTGGGATGAATCAACTCAGCTCTGTGGACATGAGCAACAATAGTTTTGATGCATCTGATGTCCCTTCATGGTTTTCAACCTTGACATCATTGACAACATTAACGATGGAAAACACACAACTTCAAGGACAGGTCCCGGCTTCTCTGTTCAGTCTTTCTAATTTGCAGACTGTACTTGTAGGCAACCCAGTTTGTCAAGAATCTGAAACAAAAGAGAGTTACTGCACGATTCCGCCCCCCAACTCCTCATACTATTATACTCAACATAACAACTGCTTTCCTGTTTCATGTTACTCAAACGTGATTTCTAGCCCAAATTGTCAATGTGCATTGCCATATACAGGCACTCTAGTCTTCAGAGCCCCTTTTTTCTCCAACTTAAGAATATCGAGTTATTTTAAATCTCTTGAGACGCAGCTCATTCAATCCTTTCAATCTAACAAGCTTCCCGTAGATTCCGTTGCCCTTTCCAATCCCTTCATGGATTCAGTTAACTACCTTGAAATACATTTATCAGTGTTTCCTTCTGGAGATGATCATTTCAATTGGACCTCGATTTCTAAGGTTGGATTTGTTCTCCAGACTTTCAAGCCTCCTCTGAGTTTCGGACCGTTTTACTTCAATGCAGATGCATATCACTACAATACGGTAGCTACCCGATCGAGCAAGTCGAGCAATAGTGTAATAATTGGAGCAGCCGTTGGTGGATCTCTCCTGGTGGTGTTATTTGTCATTGTAGGTTTATATGCTTTCCGCCAAAAAAGACGAGCAGAAAGGGCTACCGAACAGCAAAATCCTTTTGCACAATGGGATGTCATTAAGAACAGTGGTCCAGTTCCTCAATTAAAGGGAGCGAGATGGATCGCATTCGAAGAGCTGAAGAAATGCACCAATAATTTTGGAGTAGCAAATGATATCGGATCAGGTGGTTATGGGAAGGTTTATCGTGGGACACTTCCATCCGGACAGCTGGTTGCGATCAAACGAGCACAAAAGGAATCAGTGCAGGGCGGACTCGAGTTCAAAACCGAGATCGAACTCTTATCAAGAGTCCACCATAAGAACCTAGTTGGCCTTCTCGGTTTTTGCTTTGAGCAAGGCGAACAAATGCTGGTGTATGAGTATGTTGCAAATGGTAATCTCAAGGATAGTCTTTCAGGGAAGTCCGGAATCAGGCTAGACTGGATGAGGAGACTTAAAATAGCAGGTGGTGCAGCCAGAGGGCTATTGTATCTTCATGAACTAGCCGACCCTCCTATAATACATAGGGACGTTAAATCGAATAACATTCTACTGGACGAGCATTTAAATGCAAAAGTTGCCGATTTTGGCCTCTCCAAACTTATGGCTGATTCTGACAGGGATCATGTCACCACTCAAGTCAAAGGAACAATGGGCTACTTGGACCCGGAATATTACATGACACAGCAGCTAACAGAGAAGAGTGATGTTTATGGCTTTGGCGTGGTAATGTTAGAGCTGATAACTGCAAGAAGGCCAATAGAGCGAGGCAAGTACATAGTGAGGGAGGTAAAGATGGCAATTGATAAAACGAAAGATCGATACAACCTGCAAGAAATTCTTGACCCGGCTATAAACAGGGAAACACTACAAGGGGTAGAAAAGTTTGTGGATCTAGCAATGAGTTGTTTAGAAGAATCAGGGGCTGAGAGGCCGACAATGGGTGAGGTGGTGAAAGAGATTGAGAGCATAATGGTGCTTGCCGGTTTGAATCCGAATGCTGATTTAGCATCCACGTCAGCAAATTGTGATGAGGCAAGTAAGGGAAATCCAAAGAATCCTTATGGTAATGATGACTTTAGTTACAGCAGGGCCTTCCCGCCTGCAAAAGTAGAACCTCAGTAA 2721 43.7 MDHRIKMFSVLVILVQLSLLETAQPSTTQDSILLTTLMQEWENTPPNWVGSDPCGSNWDGITCTDSRITSITLPSVGLKGQLSGDIGSLSELTTLDLSYNSELTGPLPASIGSLTKLSNLILTGCRFSGSIPDTIGSLQQLRFLSLNSNRFSGKIPASIGRLSKLYWLDLADNQLEGTIPVSSGTTPGLDWLVKTEHFHFEKNRLSGGIPPKLFNPNMILIHVLFESNQLIGNIPTTVASVKSLEVVRFDRNNLNGFVPPNLSTLINVTHLSLSNNKLTGPLPNLTGMNQLSSVDMSNNSFDASDVPSWFSTLTSLTTLTMENTQLQGQVPASLFSLSNLQTVLVGNPVCQESETKESYCTIPPPNSSYYYTQHNNCFPVSCYSNVISSPNCQCALPYTGTLVFRAPFFSNLRISSYFKSLETQLIQSFQSNKLPVDSVALSNPFMDSVNYLEIHLSVFPSGDDHFNWTSISKVGFVLQTFKPPLSFGPFYFNADAYHYNTVATRSSKSSNSVIIGAAVGGSLLVVLFVIVGLYAFRQKRRAERATEQQNPFAQWDVIKNSGPVPQLKGARWIAFEELKKCTNNFGVANDIGSGGYGKVYRGTLPSGQLVAIKRAQKESVQGGLEFKTEIELLSRVHHKNLVGLLGFCFEQGEQMLVYEYVANGNLKDSLSGKSGIRLDWMRRLKIAGGAARGLLYLHELADPPIIHRDVKSNNILLDEHLNAKVADFGLSKLMADSDRDHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYGFGVVMLELITARRPIERGKYIVREVKMAIDKTKDRYNLQEILDPAINRETLQGVEKFVDLAMSCLEESGAERPTMGEVVKEIESIMVLAGLNPNADLASTSANCDEASKGNPKNPYGNDDFSYSRAFPPAKVEPQ 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4488336 4498463 + Conep03aG0090900.1 Cone3ag0878 434337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0878 906 Pfam Protein tyrosine and serine/threonine kinase 588 852 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0878 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0878 906 SMART serkin_6 585 857 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0878 906 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 661 869 - -
Cone3ag0878 906 SUPERFAMILY Protein kinase-like (PK-like) 571 861 IPR011009 -
Cone3ag0878 906 Gene3D Ribonuclease Inhibitor 187 348 IPR032675 -
Cone3ag0878 906 Gene3D Phosphorylase Kinase; domain 1 556 660 - -
Cone3ag0878 906 Gene3D Transferase(Phosphotransferase) domain 1 661 864 - -
Cone3ag0878 906 FunFam Leucine-rich repeat protein kinase family protein 550 660 - -
Cone3ag0878 906 Gene3D Ribonuclease Inhibitor 27 186 IPR032675 -
Cone3ag0878 906 FunFam Leucine-rich repeat family protein 29 184 - -
Cone3ag0878 906 CDD STKc_IRAK 591 856 - -
Cone3ag0878 906 SUPERFAMILY L domain-like 35 347 - -
Cone3ag0878 906 ProSiteProfiles Protein kinase domain profile. 585 857 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0878 906 FunFam Leucine-rich repeat protein kinase family protein 185 284 - -
Cone3ag0878 906 MobiDBLite consensus disorder prediction 870 906 - -
Cone3ag0878 906 ProSitePatterns Protein kinases ATP-binding region signature. 591 613 IPR017441 GO:0005524(InterPro)
Cone3ag0878 906 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Cone3ag0878 906 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Cone3ag0878 906 Pfam Leucine Rich Repeat 267 284 IPR001611 GO:0005515(InterPro)
Cone3ag0878 906 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Cone3ag0878 906 PANTHER RECEPTOR-LIKE PROTEIN 55 41 854 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0847 Cone-Chr10:4317044 Cone3ag0878 Cone-Chr3:4488336 0 dispersed
Cone3ag0878 Cone-Chr3:4488336 Cone5ag1032 Cone-Chr5:4499206 3.82E-88 dispersed
Cone3ag0877 Cone-Chr3:4481877 Cone3ag0878 Cone-Chr3:4488336 0 tandem
Cone3ag0878 Cone-Chr3:4488336 Cone3ag0879 Cone-Chr3:4502407 6.19e-320 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82686 PF00249 Myb_DNA-binding 4.50E-09 CL0123 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0878 - - - 0.0