Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0879 ATGACTACTACCCCTCATAGTGTTTCACATGACTCTGTGTATATTTGCAAGCTCAAGAAAGCGTTATATGGTCTCAAACAAGCACTTCATGCTTGGTTTGAGAAATTTTATGTTGTGATCTCTTCCCTTAGAGTTGCTTCTAGTAGTTATGATTCTGCTCTTTTTGTTAAGTGCATTGATGCAGGTCGTATTATTCTGTCTTTATATGTTGATGGCATGATTATTACTGGTGATGATATTGATGATATTCTTGAGCGGATTAAACTTACTGATAATAAAACTATAAATACTCTCATTGAGAGTCTTTTACTTCCATCCACCTCTTCCTTGAAGCTGCATGCATACTCTGATGTTGATCATGGTAGTGATCCCACAGATCCCGGTCCCCTAACAGCTCTGATGCAAGACTTGAAGAACATTCCACCCAACTGGGTGGGGAGAGATCCATGTGGTAGTAATTGGACTGGGATTGTCTGCACCAATTCGCGTGTAACTTCAATAATGTTAAACAGCATGGGTCTGATAGGTCAACTATCTGGAGACGTTGGATCCTTAACCGAGTTAACCACTCTGGATCTATCCAACAACGGAGAACTGAAAGGAGATCTTCCTTCATCAATTGGGAGTTTAACCAAGCTTACGAACTTAATCCTCTTGGGTTGTAGTTTCTCCGGTACTATACCGGATGCAATAGGATCTCTACAACAGCTGGTGTTTCTATCTCTTAATTCAAATCGGCTCAGTGGACAAATCCCGTCTTCCATTGGTAAGTTGTCCAATATTTACTGGCTGGATCTTGGAGATAATCTGCTTGAAGGATCCATTCCGGTCTCTACTCAGTCCACACCAGGTCTTGACTTGCTAGTTAAGGCAAAGCACTTTCATTTCGGAAATAATCGGCTGTCGGGTGAAATCCCGCCTGAACTCTTCAGCTCAAATATGAATCTGATACATGTGCTATTTGAGAATAACGAACTAAATGGCAGCATTCCGAACACCCTCGGATCTGTTAAGTCATTGGAACTGATCCGTTTTGATCGGAACAACTTAAGTGGGTCCTTGCCATCAAATCTGAATAATCTTACAAATCTTAGCGAGCTGTATCTGTCCAACAATAGTCTAACTGGTCCCATACCTGACTTAACCGACATGAACCAACTCAGCACAGTGGATCTGAGCAATAACACTTTCGATAAATCTGATTTCCCGACATGGTTACCAACCTTGACATCATTGGCAACATTAAGGATGGAAAACACAGGACTTCAAGGACCGGTTCCAGCCAACCTGTTCAGCCTCTCCAATTTGCAGACAGTATTACTGAGCAACAACAACCTAAACGGCACCTTGGATCTTGGAACCTCCCATGGGTCGGAACTGGAACTTATCGATATACATCACAATAATATAACGAACGTTACACTGGGAGGATACACCTCTACATTAATACTTGATGATAATCCAGTTTGTCAGGAACCTCAAACTAATGGGAATCATTACTGCACTGCAGCCCCACCTAATTCCTCAGATTACTACACGACTCCACTGAATAACTGTCTACCCGTATCTTGTATGAACAAGATTCTTAGCCCCAACTGTAAGTGTGTGTTCCCATATGTAGCCACTCTAAGCTTCATAGCGCCTTCCTTCTCGAACTTGGGAAACACGACTTACTTTGTATCTCTTCAAAATGATCTCATGGAAGCTTTTTCATCAAACTACATTCCGGTTGATTCTGTTTCCGTTTTCCGCACCTTCAAGGATTATTACCTTGAGATAAACATAGCAGTTTTCCCGTCTGGCGATAATGTTCGTTTTGATCGTACCAGCTGTTCTCGGATCGGGCATTTGCTAAGCAACCAAACTAGTTTCAAGATCCCGAACTTTGGAATCTATTCTCTTCATAATATTACTTGTCAGTATAATGCATCTACAAAATCAAGCAAGGTGAGCAGTGGGATAATAATTGGAGCAGTAGTGGGTGGCTCTGTCCTACTGGTGTTATTAGTCCTTGCAGGTTTATATGCTTTCCGGCAAAAGAGAAGAGCAGAAAGAGCAACCCAAATGCAAGATCCTTTCGCACAATGGGATCCGAACAAGAACAATGGCGAAGCGCCTCAAATAAAGGAAGCCAGACGGATTTCTTTTCAAGAGCTGAAGAAATGCACCAACAGTTTTTCTCAAGTAAATGAAGTTGGATCAGGAGGTTACGGAAAGGTTTATAGAGCTACGCTTCCCACTGGACAACTGGTTGCAATAAAACGAGCTCAAACGGGATCAATGCAGGGTGGGCACGAGTTCAAAACCGAAATTGAACTTTTATCAAGGTTACACCATAAGAATCTGGTCAGCCTTGTCGGATTTTGCTTTGAGCAAGGTGAACAGATGCTGGTATATGAGTATGTTCCGAATGGTAATCTGAGGGATGTTCTTTCAGCAAAGGTCGGAATCAGGTTAGACTGGATGAGGCGACTTGAAATAGCACTTGGAGCAGCTAGAGGTTTGCTATATCTTCACGAACTAGCCGACCCACCTATTATACATAGGGACATTAAATCAAATAACATTCTACTGGATGAGCATTTAAATCCGAAAGTTGCTGACTTCGGTCTCTCTAAACCTATGGCCGATGCTGACAGCGATCATGTCAGCACTCAAGTCAAAGGGACACTGGGCTACATGGACCCGGAATACTACATGACACATCAGTTGACGGAAAAGAGCGATGTTTATAGCTTTGGAGTCGTAATGTTAGAGTTGATAACTGCAAAAAAGCCAATAGAGCACGGAAAATACATAGTGAGGGAGGTAAGAGCAGAAATGCATAAAATGAAAGATGGATACAACCTCCAAGAAATTATCGACCCGGCTATAAACTGGGAATCACTGCAAGGTTTGGAAAAGTTTGTGGATCTAGCAATGAGATGTCTACAGGAAGCAGGGGCAGATAGGCCAACTATGGGCAAGGTGGTGAATGAGATCGAGAATATAATGCAGCTTGCCGGTTTGAAACCGGACGCTGGTTCTGTATCCACAACGGCAAGTTATGAGGAGGCGAGCAAGGGGAATTCCCACCACAATCCTTACAATAATGACGAGTTCAGTTACAGTGGGGCCTTCCCATCACTTTAA 3132 42.62 MTTTPHSVSHDSVYICKLKKALYGLKQALHAWFEKFYVVISSLRVASSSYDSALFVKCIDAGRIILSLYVDGMIITGDDIDDILERIKLTDNKTINTLIESLLLPSTSSLKLHAYSDVDHGSDPTDPGPLTALMQDLKNIPPNWVGRDPCGSNWTGIVCTNSRVTSIMLNSMGLIGQLSGDVGSLTELTTLDLSNNGELKGDLPSSIGSLTKLTNLILLGCSFSGTIPDAIGSLQQLVFLSLNSNRLSGQIPSSIGKLSNIYWLDLGDNLLEGSIPVSTQSTPGLDLLVKAKHFHFGNNRLSGEIPPELFSSNMNLIHVLFENNELNGSIPNTLGSVKSLELIRFDRNNLSGSLPSNLNNLTNLSELYLSNNSLTGPIPDLTDMNQLSTVDLSNNTFDKSDFPTWLPTLTSLATLRMENTGLQGPVPANLFSLSNLQTVLLSNNNLNGTLDLGTSHGSELELIDIHHNNITNVTLGGYTSTLILDDNPVCQEPQTNGNHYCTAAPPNSSDYYTTPLNNCLPVSCMNKILSPNCKCVFPYVATLSFIAPSFSNLGNTTYFVSLQNDLMEAFSSNYIPVDSVSVFRTFKDYYLEINIAVFPSGDNVRFDRTSCSRIGHLLSNQTSFKIPNFGIYSLHNITCQYNASTKSSKVSSGIIIGAVVGGSVLLVLLVLAGLYAFRQKRRAERATQMQDPFAQWDPNKNNGEAPQIKEARRISFQELKKCTNSFSQVNEVGSGGYGKVYRATLPTGQLVAIKRAQTGSMQGGHEFKTEIELLSRLHHKNLVSLVGFCFEQGEQMLVYEYVPNGNLRDVLSAKVGIRLDWMRRLEIALGAARGLLYLHELADPPIIHRDIKSNNILLDEHLNPKVADFGLSKPMADADSDHVSTQVKGTLGYMDPEYYMTHQLTEKSDVYSFGVVMLELITAKKPIEHGKYIVREVRAEMHKMKDGYNLQEIIDPAINWESLQGLEKFVDLAMRCLQEAGADRPTMGKVVNEIENIMQLAGLKPDAGSVSTTASYEEASKGNSHHNPYNNDEFSYSGAFPSL 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4502407 4508687 + Conep03aG0091000.1 Cone3ag0879 434338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0879 1043 MobiDBLite consensus disorder prediction 1011 1031 - -
Cone3ag0879 1043 ProSiteProfiles Protein kinase domain profile. 726 998 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0879 1043 SMART serkin_6 726 998 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0879 1043 Gene3D Ribonuclease Inhibitor 381 504 IPR032675 -
Cone3ag0879 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0879 1043 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 11 88 IPR013103 -
Cone3ag0879 1043 ProSitePatterns Protein kinases ATP-binding region signature. 732 754 IPR017441 GO:0005524(InterPro)
Cone3ag0879 1043 Pfam Leucine Rich Repeat 237 258 IPR001611 GO:0005515(InterPro)
Cone3ag0879 1043 Pfam Leucine Rich Repeat 363 380 IPR001611 GO:0005515(InterPro)
Cone3ag0879 1043 PANTHER RECEPTOR-LIKE PROTEIN 55 141 995 - -
Cone3ag0879 1043 FunFam Leucine-rich repeat protein kinase family protein 281 380 - -
Cone3ag0879 1043 FunFam Leucine-rich repeat family protein 125 280 - -
Cone3ag0879 1043 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 802 1010 - -
Cone3ag0879 1043 SUPERFAMILY L domain-like 132 398 - -
Cone3ag0879 1043 Pfam Protein tyrosine and serine/threonine kinase 729 993 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0879 1043 SUPERFAMILY L domain-like 383 495 - -
Cone3ag0879 1043 Gene3D Phosphorylase Kinase; domain 1 696 801 - -
Cone3ag0879 1043 Gene3D Ribonuclease Inhibitor 282 380 IPR032675 -
Cone3ag0879 1043 CDD STKc_IRAK 732 997 - -
Cone3ag0879 1043 SUPERFAMILY Protein kinase-like (PK-like) 712 1002 IPR011009 -
Cone3ag0879 1043 Gene3D Ribonuclease Inhibitor 130 281 IPR032675 -
Cone3ag0879 1043 Gene3D Transferase(Phosphotransferase) domain 1 802 1007 - -
Cone3ag0879 1043 ProSiteProfiles Leucine-rich repeat profile. 363 385 IPR001611 GO:0005515(InterPro)
Cone3ag0879 1043 FunFam Leucine-rich repeat protein kinase family protein 693 801 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0877 Cone-Chr3:4481877 Cone3ag0879 Cone-Chr3:4502407 0 dispersed
Cone3ag0879 Cone-Chr3:4502407 Cone5ag1032 Cone-Chr5:4499206 7.51E-88 dispersed
Cone6ag0311 Cone-Chr6:1438284 Cone3ag0879 Cone-Chr3:4502407 1.10E-54 dispersed
Cone3ag0878 Cone-Chr3:4488336 Cone3ag0879 Cone-Chr3:4502407 6.19e-320 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82687 PF00249 Myb_DNA-binding 4.50E-09 CL0123 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0879 - - - 0.0