Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0883 ATGGAAGGGATACCGCATCCGATTCCTCGCACTGTGGAGGAGGTCTTCAGTGACTTTAAAGGCAGACGTGCCGGCTTGATCAGAGCCCTATCCACTGACGTTGAAAAGTTCTATCAGCAGTGCGATCCTGACAAAGAAAACTTGTCTCTCTATGGATTGCCAAATGAAACATGGGAAGTCAACTTGCCTGTGGAGGAGGTCCCTCCAGAACTTCCTGAGCCAGCACTAGGTATAAACTTTGCTAGGGATGGGATGCAGGAGAAGGACTGGCTATCACTGGTTGCTGTTCATAGTGATTCATGGTTGCTTTCTGTAGCTTTCTATTTTGGTGCACGCTTTGGGTTTGGTAAGAATGAAAGGAAGAGGCTTTTCCAGATGATAAATGACCTTCCAACTATATTTGAAGTTGTGACAGGAAACATCAAGCACCCAAAGGAGCAATCTGCGACTCATAACAATGGTGGAAAAAGCAAATCAAGTGGGAAAATGTCTAGGCAATCTGAGTCTCAGAGCAAGGGAGCGAAGATTTCTCCCCCAGCCAAAGAGGAAGATGAAAGTGGGGAAGAGGAAGAAGAAGATGATGAACAGGGCGCAACATGTGGAGCCTGTGGAGACAACTATGGCACCGATGAGTTCTGGATTTGTTGTGATGCATGTGAGAGATGGTTCCATGGAAAATGTGTGAAGATTACGCCCGCAAAGGCTGAGCATATCAAACATTACAAGTGCCCAAGTTGCAGTAACAAGAGGGCTAGAGTTTGA 762 46.33 MEGIPHPIPRTVEEVFSDFKGRRAGLIRALSTDVEKFYQQCDPDKENLSLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNIKHPKEQSATHNNGGKSKSSGKMSRQSESQSKGAKISPPAKEEDESGEEEEEDDEQGATCGACGDNYGTDEFWICCDACERWFHGKCVKITPAKAEHIKHYKCPSCSNKRARV 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4532881 4536610 + Conep03aG0091400.1 Cone3ag0883 434342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0883 253 FunFam PHD finger alfin-like protein 192 248 - -
Cone3ag0883 253 MobiDBLite consensus disorder prediction 142 199 - -
Cone3ag0883 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Cone3ag0883 253 Pfam PHD-finger 200 246 IPR019787 -
Cone3ag0883 253 SMART PHD_3 199 247 IPR001965 -
Cone3ag0883 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Cone3ag0883 253 MobiDBLite consensus disorder prediction 183 198 - -
Cone3ag0883 253 SUPERFAMILY FYVE/PHD zinc finger 188 250 IPR011011 -
Cone3ag0883 253 PANTHER CPG BINDING PROTEIN 9 252 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone3ag0883 253 CDD PHD_AL_plant 200 249 IPR044104 -
Cone3ag0883 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Cone3ag0883 253 MobiDBLite consensus disorder prediction 143 174 - -
Cone3ag0883 253 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0701 Cone-Chr13:6892579 Cone3ag0883 Cone-Chr3:4532881 4.63E-154 dispersed
Cone19ag0696 Cone-Chr19:5833670 Cone3ag0883 Cone-Chr3:4532881 6.04E-152 dispersed
Cone3ag0883 Cone-Chr3:4532881 Cone7ag1605 Cone-Chr7:10940102 3.35E-124 dispersed
Cone10ag0852 Cone-Chr10:4367590 Cone3ag0883 Cone-Chr3:4532881 2.05E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45828 PF13499 EF-hand_7 5.80E-19 CL0220 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0883 K26274 - csv:101212601 435.261