Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone3ag0892 | ATGGATGAGAGGTATGATGACGGAGAGAATGATATAGAAGTAGAGAGATGCGACAGGGAGGGATCAGGATCGGAATCGGGATATTCAGACGAGAAGGAATCGACGGCGGTAAGGCTGAAACAGTCGCTGTTGCTCTCTAACTACGATAGGACCAATAATACCTCTCAGCTCGCCATTGTTGGTTCTAATGTTTGCCCCATTGAAAGCCTCGATTACGAGATTATTGAGAATGAGCTATTCAAGCAAGACTGGAGATCCAGAACAAAGGTTGAGATATGTCAGTATATCTTCCTGAAATGGACGCTTGCACTTCTTATCGGCTTAAGCACAGGGCTGGTCGGCTTCTTCAATAACCTCGCTGTAGAAAACATAGCCGGCGTCAAACTTCTCCTAACAAACAATCTCATGCTTAAGAACAGGTACTATCATGCATTTGCAGCATATGCCGGATGCAACATGGTCTTGGCCCTTGCGGCTGGAATCCTCTGTGCCTACTTCGCTCCTGCTGCTGCAGGGTCCGGTATTCCTGAGGTCAAAGCATACCTCAACGGTATAGACTCCTATTCTATACTTGCTCCAAGTACCCTCTTTGTAAAGATTTTTGGTTCGATATTTGCTGTTGCCGCTGGATTTGCTGTGGGGAAAGAAGGGCCTATGGTACATACTGGTGCATGCATTGCCTCCATACTTGGCCAGGGTGGCTCACGGAAATATGGTTTGACTTGGAGGTGGCTTAGATATTTCAAAAACGACAGAGACAGGAGGGATTTGATCACCTGTGGTGCAGCTGCTGGTGTAGCCGCTGCCTTCCGGGCCCCAGTTGGTGGCGTCCTTTTCGCCCTTGAAGAAGCTGCTTCATGGTGGAGGAGTGCTCTTCTGTGGAGGACATTCTTTACAACGGCTGTAGTGGCAGTTGTATTGAGAGGTTTCATTGAATTTTGCCGGGAAGGGTCATGTGGACTATTTGGTGAAGGAGGTCTAATCATGTTTGCCGTCAATTCAGAGAATGCCAGTTACAGTATGCCGGATCTAATTGCAGTTGTATTCCTTGGAGTTATAGGAGGTGTTTTTGGAAGCCTTTATAATTATCTTGTGGACAGGGTTCTCCGATCTTATAGCATCATAAACGAGAGAGGTCCTTTGCTAAAGGTCCTACTTGTTGTGGCCATTTCTTTCTTGACATCTTGTTGCTCATATGGCTTTCCATGGCTTTCAAAATGCATTCCTTGCCCACCTCACTTAGAGGAAGACCAATGCCCTACCATAGGCCGTTCCGGAAACTACAAGAACTTTCAATGCCCACCTAACCACTACAACGACCTTGCCTCTCTTTTTTTCAATACCAATGATGATGCTATACGCAATCTGTTAAGCCCGGGTTCTAGTAAGGATTTCCGTTTCTCGACCCTTCTGGCTTTCTTTTCCGCTATATACTTTCTAGGCATAGTCACTTACGGCATTGCCGTCCCTTCCGGACTCTTCATCCCCGTCATTCTTGCGGGGTCCACTTATGGACGCCTCGTGGGGAAGCTCTTTAGTCCTGTATCGGATCTTGACGTGGGCTTTTTCGCTCTCCTTGGTGCTGCATCGTTTCTTGGTGGGACCATGAGAATGACCGTTTCTCTATGCGTAATACTTCTAGAACTTACTAATGATCTTTTGATGCTTCCACTTGTCATGTTGGTCCTTCTCATTTCGAAAACCGTAGCAGATAGTTTCAACCATGGTGTTTACGACCAAATAGTGAAAATGAAAGGCTTACCTTACATGGAAGCCCATGCAGAACCATACATGAGACACTTAGTTGCTAGTGATGTTGTTTCGGGTCCGTTAATTACATTCTCTGGTATTGAAAAGGTTGGAACTATAGTGCATGCTTTGAAGCTGACAGGGCATAATGGGTTTCCTGTAATTGACGAGCCACCTTTTTCTGATTCTCCTGAGCTATGTGGCCTTGTTTTGAGGTCTCATTTACTAGTTTTGCTTAAAGGGAAGAAGTTTACAAAGCAGAGGATGAGAACTAGGTCTGAGATTATGAAGAGGTTTAAGGCGCACGATTTTGCGAAAGCAGGTTCGGGAAAAGGGGTGAAGCTTGAGGATTTGGATATTCAGGATGAGGAGATGGAGATGTTTCTTGATCTTCATCCTATTACGAATACTTCAACGTATACTGTGGTTGAGACCATGTCTTTGGCTAAAGCTGCTGTACTGTTTCGGCAACTTGGTCTGAGGCACATGTTAGTGGTTCCTAAGACACCTGGAAGGTCTCCGATTGTTGGGATTCTTACGCGGCACGACTTCATGCCGGAGCATGTACTGAGACTTTACCCGCACTTCAAGCACCACAAGTAA | 2352 | 45.88 | MDERYDDGENDIEVERCDREGSGSESGYSDEKESTAVRLKQSLLLSNYDRTNNTSQLAIVGSNVCPIESLDYEIIENELFKQDWRSRTKVEICQYIFLKWTLALLIGLSTGLVGFFNNLAVENIAGVKLLLTNNLMLKNRYYHAFAAYAGCNMVLALAAGILCAYFAPAAAGSGIPEVKAYLNGIDSYSILAPSTLFVKIFGSIFAVAAGFAVGKEGPMVHTGACIASILGQGGSRKYGLTWRWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCREGSCGLFGEGGLIMFAVNSENASYSMPDLIAVVFLGVIGGVFGSLYNYLVDRVLRSYSIINERGPLLKVLLVVAISFLTSCCSYGFPWLSKCIPCPPHLEEDQCPTIGRSGNYKNFQCPPNHYNDLASLFFNTNDDAIRNLLSPGSSKDFRFSTLLAFFSAIYFLGIVTYGIAVPSGLFIPVILAGSTYGRLVGKLFSPVSDLDVGFFALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLVMLVLLISKTVADSFNHGVYDQIVKMKGLPYMEAHAEPYMRHLVASDVVSGPLITFSGIEKVGTIVHALKLTGHNGFPVIDEPPFSDSPELCGLVLRSHLLVLLKGKKFTKQRMRTRSEIMKRFKAHDFAKAGSGKGVKLEDLDIQDEEMEMFLDLHPITNTSTYTVVETMSLAKAAVLFRQLGLRHMLVVPKTPGRSPIVGILTRHDFMPEHVLRLYPHFKHHK | 783 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4599137 | 4602411 | - | Conep03aG0092300.1 | Cone3ag0892 | 434351 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone3ag0892 | 783 | Gene3D | - | 591 | 774 | IPR046342 | - | |
| Cone3ag0892 | 783 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Cone3ag0892 | 783 | PRINTS | Chloride channel signature | 263 | 282 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone3ag0892 | 783 | PRINTS | Chloride channel signature | 489 | 509 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone3ag0892 | 783 | PRINTS | Chloride channel signature | 521 | 537 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone3ag0892 | 783 | PRINTS | Chloride channel signature | 539 | 558 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone3ag0892 | 783 | PRINTS | Chloride channel signature | 577 | 591 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone3ag0892 | 783 | PRINTS | Chloride channel signature | 168 | 185 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone3ag0892 | 783 | PRINTS | Chloride channel signature | 199 | 218 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone3ag0892 | 783 | SMART | cbs_1 | 610 | 663 | IPR000644 | - | |
| Cone3ag0892 | 783 | SMART | cbs_1 | 721 | 774 | IPR000644 | - | |
| Cone3ag0892 | 783 | FunFam | Chloride channel ClC3 | 91 | 405 | - | - | |
| Cone3ag0892 | 783 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 603 | 770 | - | - | |
| Cone3ag0892 | 783 | SUPERFAMILY | Clc chloride channel | 77 | 592 | IPR014743 | - | |
| Cone3ag0892 | 783 | MobiDBLite | consensus disorder prediction | 10 | 34 | - | - | |
| Cone3ag0892 | 783 | Gene3D | Clc chloride channel | 91 | 590 | - | - | |
| Cone3ag0892 | 783 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 48 | 772 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Cone3ag0892 | 783 | Pfam | CBS domain | 720 | 768 | IPR000644 | - | |
| Cone3ag0892 | 783 | Pfam | Voltage gated chloride channel | 156 | 571 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone3ag0892 | 783 | CDD | ClC_6_like | 68 | 590 | - | - | |
| Cone3ag0892 | 783 | PRINTS | Plant CLC chloride channel signature | 73 | 81 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone3ag0892 | 783 | PRINTS | Plant CLC chloride channel signature | 298 | 308 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone3ag0892 | 783 | PRINTS | Plant CLC chloride channel signature | 316 | 323 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone3ag0892 | 783 | PRINTS | Plant CLC chloride channel signature | 284 | 292 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone3ag0892 | 783 | PRINTS | Plant CLC chloride channel signature | 441 | 457 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone3ag0892 | 783 | ProSiteProfiles | CBS domain profile. | 717 | 781 | IPR000644 | - | |
| Cone3ag0892 | 783 | SUPERFAMILY | CBS-domain pair | 594 | 768 | IPR046342 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0789 | Cone-Chr12:7236184 | Cone3ag0892 | Cone-Chr3:4599137 | 0 | dispersed | |
| Cone3ag0892 | Cone-Chr3:4599137 | Cone8ag0780 | Cone-Chr8:7787359 | 0 | dispersed | |
| Cone10ag0861 | Cone-Chr10:4442587 | Cone3ag0892 | Cone-Chr3:4599137 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone3ag0892 | K05016 | - | rcu:8262590 | 1179.47 |