Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0913 ATGAGTCTTTCTGGTTCAGTTTCGCCGTCACTCTCGAGGCTCGATTTTCTCACTCGTCTCTCTCTAGCTGGAAACGATTTCAAGGGTTACATTGAGGTCGGAAATTTGAGTAATCTTCGATTTCTGAACATTTCGAACAATCAGTTCAGTGGAGGTTTGGATTGGAAGTTCGAAGCCCTAGAAAACTTGGAAGTGATCGATGCGTATGACAACAACTTCACTGCTCTGCTTCCAGTTGGGATTTTGAGCTTGAAGAAGAAGCTGAAGCATTTGGATCTCGGAGGCAACTATTTTCGCGACGAAATTCCGGCGAGTTATGGTGATTTAGTGAATCTGGAGTATCTTTCTCTTGCCGGGAATGATTTACAAGGAAAAATTCCTGGTGAGCTTGGAAATCTTACGAACTTGAGAGAGATTTATTTGGGTTACTACAATGTCTTTGAAGGTGGGATTCCAAAAGAGTTTGGGAAATTGTTGAATCTAGTTCATATGGATATTTCAAATTGTGAATTGCATGGTCAGATTCCTCATGAATTGGGGAATTTAAAAACCCTGGACACACTGTATTTGCATACAAATCTTCTCTCTGGAGCTATTCCAAAGCATTTAGGCAACCTGACGAACTTAGTTAATCTTGATGTATCCAACAATGCACTCACCGGTGAAATTCCGTCCGAGTTTGTAAATCTCAAGCAAATCAAGCTTTTCAATCTCTTCATGAACAGATTACATGGTTCGATTCCGGATTATGTATCTGATTTGCCCAGTCTTGAAACTCTGTGCTTGTGGATGAACAATTTCACAGGCATAATCCCGGGAAATCTTGGTCGAAATGGGAAGCTTCAACTTCTCGATTTGTCCTCCAATAAGCTCACTGGAACTATTCCTCCCTACATTTGTTCATCAAATCAGCTCAAGATACTGATATTGATGAACAATTTTCTTTTCGGGGCAATTCCTGATAGCTTGGGGACCTGTTCTAGTCTCACTAAAGTGAGATTAGGACAGAATTATTTGAACGGAAGCATTCCGAATAGGTTCATTTACCTGCCGGAGCTGAATCTAGTTGAGTTGCAGAACAATTACTTATCTGGAACTCTGTTGGAGAATTCTAATAGCACGTCAAAACCCATCAAATTAGGGCAGCTTAATCTATCTAATAATCGTTTATTTGGTGCTTTACCCTTTTCACTTTCGAATTTCTCTTCTCTGCAGATTCTTCTCCTTTCTGGGAACCATTTTTCAGGTTCAATTCCACCTTCTATAGGCCAACTCCATCAAGTTCTAAAGCTTGATGTTAGTCGAAACTCACTCTCTGGTGAAATCCCACCTGAAATCGGCAACTGTTTGCTTCTCTCTTACCTTGACATGAGTGAGAACAATCTCTCTGGTCCAATCCCACCAGAAATGTCCAATACTCATATCCTGAATTACTTGAATTTATCAAGAAACCACCTCAATCAAACTATACCCAGATCAATTGGAGCCATGAAAAGCCTCACAATAGTTGATTTATCCTTCAATAATCTGTCTGGAAAGTTACCGGAGTTGGGGCAATTCGCGCTATTCAATGCTTCAACCTTCGCCGGAAATCCGCAACTTTGTGGCTCTTTACTAAACAACCCCTGCAATTTCACCACAATCACAAAAACACCCAGAAAAAGCGCCTCAGATATCAAGCTCATCCTTGCACTTGGCCTACTAATTTGCTCTTTAGTCTTTGCTGTTGCAGCCATAGTCAAAGCCAGATCATTCAAAGGCAACGGCTCTGATTCGTGGAAGATGACAGCATTTCAAAAGCTGGATTTTACGGTGACTGATACACTTGAATGTGTGAAAGATAGCAATATTATAGGCAGAGGAGGAGCTGGGATTGTCTACCATGGAAAAATGCCAAATGGGGTCGAAATTGCTGTGAAAAAACTGGTGGGTTTTGGGCTAAATAGCAGCCATGACCGTGGATTCAGAGCCGAAATCCAAACCTTAGGTAGCATTCGCCACAGAAACATAGTGAGACTCTTAGCATTTTGCTCGAACAAATCGACCAATTTGCTTGTTTATGAGTACATGATAAATGGAAGCTTGGGAGAGGCGATTCATGGGAAAAAAGGTGCATTTTTGGGATGGAACTTGAGGTACAAGATAGCCATTGACGCTGCAAAAGGGTTGTGTTATTTGCATCATGATTGTTCCCCATTGATCATCCATAGGGACGTAAAATCCAATAATATTTTGTTGAATTCAAGCTTTGAAGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCTTTTCTGATGGTGGTGCTTCAGAGTGTATGTCTGCTGTTGCTGGGTCTTATGGCTACATTGCTCCTGAGTATGCATATACATTAAGAGTGGACGAGAAGAGTGACGTGTATAGCTACGGAGTGGTGGTTCTGGAGCTGCTGACAGGGCGGTGGGCGGTAGGGGAGTTCGGGGATGGGGTCGATATAGTTCAATGGTGTAAGAAGTCAATACAAGAAGCAGATCATGATAGTGAAGATATGATAATGCAGATTGTTGATCAAAGAATAGTATCTAAAGTGCCCAAAGATGAAGCAAAGCACTTGTTCTTCATTGCAATGCTGTGTGTCCAAGAGAACAGTGTCGAGCGGCCCACCATGAGAGATGTTGTTCAAATGCTCTCTGAGTATCCACGTCAGCATCAATCTCCCTCCCCATCCTCTTCCTCCTCTTCTCTTTCTCCTTCTCCTGCTTCTAAAAATCATGGGCTCAAACAAAATGTTTGA 2769 41.82 MSLSGSVSPSLSRLDFLTRLSLAGNDFKGYIEVGNLSNLRFLNISNNQFSGGLDWKFEALENLEVIDAYDNNFTALLPVGILSLKKKLKHLDLGGNYFRDEIPASYGDLVNLEYLSLAGNDLQGKIPGELGNLTNLREIYLGYYNVFEGGIPKEFGKLLNLVHMDISNCELHGQIPHELGNLKTLDTLYLHTNLLSGAIPKHLGNLTNLVNLDVSNNALTGEIPSEFVNLKQIKLFNLFMNRLHGSIPDYVSDLPSLETLCLWMNNFTGIIPGNLGRNGKLQLLDLSSNKLTGTIPPYICSSNQLKILILMNNFLFGAIPDSLGTCSSLTKVRLGQNYLNGSIPNRFIYLPELNLVELQNNYLSGTLLENSNSTSKPIKLGQLNLSNNRLFGALPFSLSNFSSLQILLLSGNHFSGSIPPSIGQLHQVLKLDVSRNSLSGEIPPEIGNCLLLSYLDMSENNLSGPIPPEMSNTHILNYLNLSRNHLNQTIPRSIGAMKSLTIVDLSFNNLSGKLPELGQFALFNASTFAGNPQLCGSLLNNPCNFTTITKTPRKSASDIKLILALGLLICSLVFAVAAIVKARSFKGNGSDSWKMTAFQKLDFTVTDTLECVKDSNIIGRGGAGIVYHGKMPNGVEIAVKKLVGFGLNSSHDRGFRAEIQTLGSIRHRNIVRLLAFCSNKSTNLLVYEYMINGSLGEAIHGKKGAFLGWNLRYKIAIDAAKGLCYLHHDCSPLIIHRDVKSNNILLNSSFEAHVADFGLAKFFSDGGASECMSAVAGSYGYIAPEYAYTLRVDEKSDVYSYGVVVLELLTGRWAVGEFGDGVDIVQWCKKSIQEADHDSEDMIMQIVDQRIVSKVPKDEAKHLFFIAMLCVQENSVERPTMRDVVQMLSEYPRQHQSPSPSSSSSSLSPSPASKNHGLKQNV 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4685111 4689158 - Conep03aG0094400.1 Cone3ag0913 434372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0913 922 SUPERFAMILY L domain-like 87 365 - -
Cone3ag0913 922 SMART LRR_typ_2 401 425 IPR003591 -
Cone3ag0913 922 SMART LRR_typ_2 206 229 IPR003591 -
Cone3ag0913 922 SMART LRR_typ_2 36 59 IPR003591 -
Cone3ag0913 922 SMART LRR_typ_2 254 278 IPR003591 -
Cone3ag0913 922 SMART LRR_typ_2 497 520 IPR003591 -
Cone3ag0913 922 SMART LRR_typ_2 60 84 IPR003591 -
Cone3ag0913 922 SMART LRR_typ_2 109 133 IPR003591 -
Cone3ag0913 922 SMART LRR_typ_2 279 302 IPR003591 -
Cone3ag0913 922 SUPERFAMILY L domain-like 277 536 - -
Cone3ag0913 922 Gene3D Transferase(Phosphotransferase) domain 1 690 906 - -
Cone3ag0913 922 ProSiteProfiles Protein kinase domain profile. 612 865 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0913 922 SMART serkin_6 612 865 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0913 922 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 690 905 - -
Cone3ag0913 922 Gene3D Phosphorylase Kinase; domain 1 585 689 - -
Cone3ag0913 922 Gene3D Ribonuclease Inhibitor 252 550 IPR032675 -
Cone3ag0913 922 MobiDBLite consensus disorder prediction 891 922 - -
Cone3ag0913 922 SUPERFAMILY L domain-like 6 103 - -
Cone3ag0913 922 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 146 251 - -
Cone3ag0913 922 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 258 547 - -
Cone3ag0913 922 Gene3D Ribonuclease Inhibitor 1 251 IPR032675 -
Cone3ag0913 922 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 57 145 - -
Cone3ag0913 922 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 582 689 - -
Cone3ag0913 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 734 746 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0913 922 Pfam Protein kinase domain 614 886 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0913 922 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 890 IPR050647 -
Cone3ag0913 922 SUPERFAMILY Protein kinase-like (PK-like) 604 888 IPR011009 -
Cone3ag0913 922 Pfam Leucine Rich Repeat 430 449 IPR001611 GO:0005515(InterPro)
Cone3ag0913 922 Pfam Leucine Rich Repeat 208 230 IPR001611 GO:0005515(InterPro)
Cone3ag0913 922 Pfam Leucine Rich Repeat 280 301 IPR001611 GO:0005515(InterPro)
Cone3ag0913 922 Pfam Leucine Rich Repeat 160 182 IPR001611 GO:0005515(InterPro)
Cone3ag0913 922 Pfam Leucine Rich Repeat 499 516 IPR001611 GO:0005515(InterPro)
Cone3ag0913 922 Pfam Leucine Rich Repeat 452 472 IPR001611 GO:0005515(InterPro)
Cone3ag0913 922 Pfam Leucine Rich Repeat 38 57 IPR001611 GO:0005515(InterPro)
Cone3ag0913 922 Pfam Leucine Rich Repeat 256 276 IPR001611 GO:0005515(InterPro)
Cone3ag0913 922 Pfam Leucine Rich Repeat 111 133 IPR001611 GO:0005515(InterPro)
Cone3ag0913 922 Pfam Leucine Rich Repeat 403 425 IPR001611 GO:0005515(InterPro)
Cone3ag0913 922 Pfam Leucine Rich Repeat 476 496 IPR001611 GO:0005515(InterPro)
Cone3ag0913 922 Pfam Leucine Rich Repeat 87 108 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1165 Cone-Chr20:7862451 Cone3ag0913 Cone-Chr3:4685111 4.51E-06 dispersed
Cone3ag0913 Cone-Chr3:4685111 Cone6ag1494 Cone-Chr6:11836339 9.69E-158 dispersed
Cone17ag1415 Cone-Chr17:9711716 Cone3ag0913 Cone-Chr3:4685111 3.10E-135 transposed
Cone19ag0575 Cone-Chr19:5101157 Cone3ag0913 Cone-Chr3:4685111 1.25E-09 transposed
Cone10ag0885 Cone-Chr10:4565453 Cone3ag0913 Cone-Chr3:4685111 1.07E-287 wgd
Cone13ag0399 Cone-Chr13:3641599 Cone3ag0913 Cone-Chr3:4685111 5.45E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82689 PF13041 PPR_2 7.00E-09 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0913 - - - 0.0