Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0918 ATGGATGGGTATGATCCGTTGGATCCTTCTGCCAACATAACTATCTCTTGGGATTTGATGCAAGAAAATGATGACACTTATGATGTGAAGGTATCCCTATACAACTTCCAACTGTACCGGCATGTGTCGGAACCCAGTTGGAAGCTGAGCTGGACATGGGGAGGGGATGAGGCAATATGGAATATGTGGGGAGCAGAGGCAACATTGCAAGGGAACTGCTCAAAGTACAGAGGGAAAGGAGAACTCCCACACTGCTGTGAGAAAAGGCCAGTGATTGTGGACCTGATGCCAGGGGCACCCTATAACTTGCAGGTTTCTAATTGTTGTAAGGGAGGGATATTATCGTCAATTACTCAGGACCCTACAAAGATTGGGTCGGCATTCCAAATGAGTATTGGAAAAGAAGGTGGTGGCAGCGGCGGTGATGGGAAAATGCCGGAGAATTTCGATCTAGGCCTTCCCGGTTATACTTGTGGGCCTTCATTTCAAGTCTCTCCTACTAGATTTAGTCAAGACAGAGGACGTAGATGGACCCAAGCTCTCGAGACATGGAATGTGACGTGTGTATACTCCCAATTTCTAGCATCTCCTACACCAACTTGCTGTGTATCCCTTTCTGCCTTCTACAACAGCACCATTGTTCCTTGCCCACAGTGCAGCTGTAGTTGCCAAGGACTTGATGGTGCAAAATGTCTCAAGGAAGGAGAGATCCCTTCATTCTTACAACTTCCACGGGAACAAGACATGGAAGAAAGAGAGGAAGGACCAGACATGGTAACATGTTCTCAACACATGTGCCCTATAAAAATACACTGGCACATAAAAGAAAGCTACACACAATACTGGAGGGTCAAGATCACAATCACAAACCTTAATGTTGTCAAAAACTACTCTCAATGGAGCTTAGTGGTGGCCCACCCTAACCTGCAGAGTTTGACTCAAGTCTTCAGCTTCAACTATCATCCCATCAACCTCTATGGCAACATCAATGATACAGGGGTATTTTGGGGAATACAGTACTATAATGACATGTTACCATCAGGAGAGAGTGGAAATGTTCAAAGTGAGATGCTGCTTCATAAAGATGGAGGAAATTTCACTTTCAAAGGAGGATGGGCTTTTCCTAGAAGGATCTCATTCAATGGTGATGCTTGTGTTATGCCCCCCCCTGATCAATATCCAATCCTCCCTAACCATGCACATACCATTGCTGCTCTTACTACCTCACACTTACTAGCTTCCATTTCAATATTGCTTGTGCTTATGTTCTAA 1272 44.97 MDGYDPLDPSANITISWDLMQENDDTYDVKVSLYNFQLYRHVSEPSWKLSWTWGGDEAIWNMWGAEATLQGNCSKYRGKGELPHCCEKRPVIVDLMPGAPYNLQVSNCCKGGILSSITQDPTKIGSAFQMSIGKEGGGSGGDGKMPENFDLGLPGYTCGPSFQVSPTRFSQDRGRRWTQALETWNVTCVYSQFLASPTPTCCVSLSAFYNSTIVPCPQCSCSCQGLDGAKCLKEGEIPSFLQLPREQDMEEREEGPDMVTCSQHMCPIKIHWHIKESYTQYWRVKITITNLNVVKNYSQWSLVVAHPNLQSLTQVFSFNYHPINLYGNINDTGVFWGIQYYNDMLPSGESGNVQSEMLLHKDGGNFTFKGGWAFPRRISFNGDACVMPPPDQYPILPNHAHTIAALTTSHLLASISILLVLMF 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4716767 4718936 + Conep03aG0094900.1 Cone3ag0918 434377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0918 423 PIRSF COBRA 1 423 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cone3ag0918 423 Pfam COBRA-like protein 27 191 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cone3ag0918 423 SUPERFAMILY Carbohydrate-binding domain 11 74 IPR008965 GO:0030246(InterPro)
Cone3ag0918 423 PANTHER PROTEIN COBRA 3 414 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0037 Cone-Chr19:253809 Cone3ag0918 Cone-Chr3:4716767 3.90E-161 dispersed
Cone2ag0494 Cone-Chr2:2677819 Cone3ag0918 Cone-Chr3:4716767 5.58E-155 dispersed
Cone3ag0918 Cone-Chr3:4716767 Cone3ag1493 Cone-Chr3:33556323 1.47E-55 dispersed
Cone3ag0918 Cone-Chr3:4716767 Cone11ag0355 Cone-Chr11:1740982 3.29E-160 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0918 - - - 0.0