Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0926 ATGGAGAAGTACGAGCTTGTGAAGGATATTGGATCTGGAAATTTCGGTGTGGCTCGGCTTATGAGGAACAAAGAGACGAAAGAGCTCGTCGCCATGAAATACCTCGAGCGTGGCCTCAAGATTGATGAGAATGTAGCTAGAGAGATCATAAACCACAGATCTCTTTGCCATCCGAACATAATTCGCTTCAAGGAGGTGGTCTTGACTCCTACTCATCTAGCTATTGTCATGGAGTATGCAGCAGGTGGAGAGCTCTTTGAGCGAATCTGCAATGCTGGGAGATTCAGTGAAGATGAGGCAAGATATTTCTTTCAACAGCTTATCTCAGGAGTTAGCTTCTGCCATGCTATGCAAATCTGTCATAGAGATTTAAAGTTAGAGAATACCCTGTTGGATGGAAGCCCTGCTCCTCGCCTTAAAATCTGTGACTTTGGTTACTCCAAGTCGTCCCTGTTGCATTCAAGTCCCAAATCAACTGTGGGAACTCCGGCTTATATTGCACCCGAGGTCCTTTCAAGGAGAGAGTATGATGGAAAGATGGCAGATGTATGGTCATGTGGAGTGACTCTCTATGTTATGCTAGTAGGAGCATACCCTTTTGAAGACCAGACCGATCCGAAGAACTTCAGGAAAACCATTAACCGAATAATGGCTGTTCAATATAAGATCCCAGAATATGTTCGTATATCTCAAGAATGCAGACATCTTCTGTCTCGGATATTTGTTGCAAATCCAGCTAAGAGGATCACCATTACAGAAATCAAGAGAGACCCATGGTTCCTAAAGAACTTGCCAAGGGAACTTACGGAAGCAGCTCAAGCCATCTACTACAACAGGGAAAACCCAGGCTTTTCCCTCCAAAGTGTGGCAGAGATAATGAAAATCGTAGAGGAGGCCAAAATTCGTTCTCCTTCAACCCGGTCAATTGGAGGCTTTGGCTGGGGAAGAGAAGAAGAAGAAGGTGATGGGTCGAAAGAAGATGTAAATCCCAAAGAAGAAGATCAAGAAGATGAGTACGAAAAGACCGTAAAGGAAGCTCAAGCAAGTGGAGAAGTTCATGTCACTTGA 1068 44.38 MEKYELVKDIGSGNFGVARLMRNKETKELVAMKYLERGLKIDENVAREIINHRSLCHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVSFCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSSPKSTVGTPAYIAPEVLSRREYDGKMADVWSCGVTLYVMLVGAYPFEDQTDPKNFRKTINRIMAVQYKIPEYVRISQECRHLLSRIFVANPAKRITITEIKRDPWFLKNLPRELTEAAQAIYYNRENPGFSLQSVAEIMKIVEEAKIRSPSTRSIGGFGWGREEEEGDGSKEDVNPKEEDQEDEYEKTVKEAQASGEVHVT 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4748049 4751375 + Conep03aG0095700.1 Cone3ag0926 434385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0926 355 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Cone3ag0926 355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Cone3ag0926 355 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Cone3ag0926 355 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0926 355 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Cone3ag0926 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0926 355 MobiDBLite consensus disorder prediction 307 355 - -
Cone3ag0926 355 PANTHER SERINE/THREONINE KINASE 7 302 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cone3ag0926 355 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0926 355 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Cone3ag0926 355 MobiDBLite consensus disorder prediction 313 347 - -
Cone3ag0926 355 CDD STKc_SnRK2 3 259 - -
Cone3ag0926 355 SMART serkin_6 4 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0926 355 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0926 K14498 - - rcu:8267034 611.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0926 Cone-Chr3:4748049 Cone6ag1195 Cone-Chr6:9238482 4.65E-200 dispersed
Cone10ag0899 Cone-Chr10:4648601 Cone3ag0926 Cone-Chr3:4748049 2.01E-242 wgd
Cone13ag0386 Cone-Chr13:3516461 Cone3ag0926 Cone-Chr3:4748049 8.27E-215 wgd
Cone19ag0396 Cone-Chr19:3345335 Cone3ag0926 Cone-Chr3:4748049 3.41E-218 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g470 . . . . . . . . . Cmo11g01342 Cma02g00437 . Car02g00291 . . Cpe04g00263 . Bhi05g01154 . . . . . . Cla02g00576 . . . . . . Cone12ag1115 Cone8ag1156 Cone3ag0926 . Lsi10g00574 Csa07g00785 Chy11g00432 Cme01g00025 Blo04g00493 . . Bda14g00524 Bpe15g00890 . Bma03g00525 . . Cmo02g00439 . Cma11g01769 . Car11g01080 . . Cpe05g01226 Bhi10g02071 . . . . . . . . . . . . . Lsi11g01030 Csa02g01204 Chy01g00031 Cme11g00299
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82690 PF06026 Rib_5-P_isom_A 1.60E-62 CL0246 Cone PK