Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0933 ATGAAAAACCCATTTCTATTACTTCTTTCCTTCCTTCTCTCTCTCTCCTCTGCAGCGGCAGCAGCCACCACAAACACCTCCACAACAACTTGCCCCATGGACTTGAATTACGTCTCAAGAATCCCATGGAACACAACTGATTGTCAATCCAAATACTTCCAACCCACCTCCAAAATTTACCAAACTGATACCACAGAGAAATCCTGTTGCCAAACACTCTTATCCTTATACGGGATAGCCCTATCCGAACACCTCAAATCTACCTCCCTTTTCCAGCTCCCTGACCTCCCTACATCCACTTCTTGCCTCCAGGATTTCCAGTCCAAGCTCACCTCCCTCTCCCTCCCAAACAACCTCCTCTCTTACTGCTTTGACCCTCTCCAATTTGTCATCTCTCCTAACATATGTGCTCGTATTGAAACAACCCAAGACTGGGTTGCTAAACTCGGTCCGATCACACCCCTCGATTCTGGGTGTAAGTCCGATCTAACGGTACTTACCAACTGTGATACTTGTCTTCAAGCTGGATTGAAGGTCCAGAACAGTCTGACTGCAATTGATGGTAATAAATCCAATTCTCGTAATTGCTTTTACTTTGCTATTATTTATGCTGCTGGGATTGTTAATGAGTATGGACCTGAGAGTGATAGTGCTACAAATTGTATATTTAACTTGCAATTGAAAATTTCTGATGTGGGTTCCGGAAAAAAGGACCCTACGGGCCTTGTTTTCGGGCTAATTGGGGCCAGCTTAGCCGTCTTGGTCATAGTTGTTTTGTTGGGGTTGTATTTTTGGTATGATAGAAGGTGGAAGAGGAAGAAAATGGTTGAAGAGGGTTTAAACCTTCCGGGTTATGAAATGGAGGGACAAGGGTCTAGTAGGCCTAGGGTGAAGCCCAATACAGGTTCTATTTGGTTCAAGATTCATGAGATAGAGAAGGCAACAGACAAATTTTCACAAAAAAACTTTATTGGGAGAGGAGGGTTTGGTCTTGTTTACAAAGGGACTCTGCCTGATGGGAGCCAAGTTGCCGTGAAGAAAGTGATAGAATCAGATTTTCAAGGGGATCTAGAGTTTTGCAATGAGGTTGAGATAATAAGTAATTTGAAGCACCGGAATCTTGTTCCGCTTAGAGGGTGTTGCGTTGTTGATGGGAATAACAATGAGAATGAGAATAGTGGGGAGCAAGGAATTAGTCATAGATATCTTGTTTACGATTACATGCCAAATGGAAATGTAGACGACCGTTTGTTTCCTTCACCTGGTGCGACCGTAAAACAACCATTGACATGGCCTCAGAGGAAGAACATCATCTTAGATGTGGCTCGAGGTTTAGCTTATCTACACTATGGAGTCAAACCCGCTATCTATCATAGAGATATAAAGGCTACCAATATACTCCTTGATGTAGATATGAGAGCTAGAGTTGCTGATTTTGGGCTAGCCAAACAAATCCGAGAAGGGAAATCTCATATGACGACCCGGGTTGCTGGGACCCATGGTTACTTAGCCCCAGAATATGCCCTCTACGGTCAACTAACTGAAAAAAGTGATGTTTATAGTTTTGGTGTTGTTATTTTGGAGATAATGTGTGGGAGGAAAGCTCTTGACTTATCTTCATCTGGATCTCCCCAAGCATTCTTGATTACGGATTGGGCTTGGTCCTTGGTGAAAGCCGGGAAAGTAGGAGAAGCTTTAGATGGTTGTTTGTTGAGGGACGGGGATTCGGTTAATCTGAATCCTAAGTCCATTATGGAGAGGTATTTGTTGGTTGGGATTTTATGTGCTCATATAATGGTGGCCTTAAGGCCTACTATATTGGATGCATTGAAAATGTTGGAAGGAGATATTGAGCTTCCACAAATCCCCGATCGGCCGATGCCTTTAGGGCAACCTTCATTTTACGGGGACGGCTCTAATTTTAGCATTTCGCCGTGGTATAGTGGAGACATGCTCAGGTAA 1962 43.53 MKNPFLLLLSFLLSLSSAAAAATTNTSTTTCPMDLNYVSRIPWNTTDCQSKYFQPTSKIYQTDTTEKSCCQTLLSLYGIALSEHLKSTSLFQLPDLPTSTSCLQDFQSKLTSLSLPNNLLSYCFDPLQFVISPNICARIETTQDWVAKLGPITPLDSGCKSDLTVLTNCDTCLQAGLKVQNSLTAIDGNKSNSRNCFYFAIIYAAGIVNEYGPESDSATNCIFNLQLKISDVGSGKKDPTGLVFGLIGASLAVLVIVVLLGLYFWYDRRWKRKKMVEEGLNLPGYEMEGQGSSRPRVKPNTGSIWFKIHEIEKATDKFSQKNFIGRGGFGLVYKGTLPDGSQVAVKKVIESDFQGDLEFCNEVEIISNLKHRNLVPLRGCCVVDGNNNENENSGEQGISHRYLVYDYMPNGNVDDRLFPSPGATVKQPLTWPQRKNIILDVARGLAYLHYGVKPAIYHRDIKATNILLDVDMRARVADFGLAKQIREGKSHMTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVILEIMCGRKALDLSSSGSPQAFLITDWAWSLVKAGKVGEALDGCLLRDGDSVNLNPKSIMERYLLVGILCAHIMVALRPTILDALKMLEGDIELPQIPDRPMPLGQPSFYGDGSNFSISPWYSGDMLR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4830994 4833267 - Conep03aG0096400.1 Cone3ag0933 434392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0933 653 ProSiteProfiles Protein kinase domain profile. 318 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0933 653 PANTHER OS01G0750732 PROTEIN 58 633 IPR050885 -
Cone3ag0933 653 SUPERFAMILY Protein kinase-like (PK-like) 298 614 IPR011009 -
Cone3ag0933 653 CDD STKc_IRAK 324 615 - -
Cone3ag0933 653 FunFam Receptor-like serine/threonine-protein kinase At4g25390 285 407 - -
Cone3ag0933 653 Gene3D Phosphorylase Kinase; domain 1 289 407 - -
Cone3ag0933 653 Pfam SPARK 26 197 IPR043891 -
Cone3ag0933 653 Pfam Protein kinase domain 319 537 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0933 653 SMART serkin_6 318 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0933 653 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 408 621 - -
Cone3ag0933 653 ProSitePatterns Protein kinases ATP-binding region signature. 324 347 IPR017441 GO:0005524(InterPro)
Cone3ag0933 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0933 653 Gene3D Transferase(Phosphotransferase) domain 1 408 620 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0888 Cone-Chr20:6476040 Cone3ag0933 Cone-Chr3:4830994 5.08E-68 dispersed
Cone3ag0933 Cone-Chr3:4830994 Cone4ag1426 Cone-Chr4:11369690 4.33E-213 dispersed
Cone7ag1510 Cone-Chr7:10525823 Cone3ag0933 Cone-Chr3:4830994 1.09E-34 dispersed
Cone3ag0933 Cone-Chr3:4830994 Cone3ag0939 Cone-Chr3:4872033 1.98E-72 proximal
Cone10ag0905 Cone-Chr10:4701371 Cone3ag0933 Cone-Chr3:4830994 1.24E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82691 PF01142 TruD 2.50E-69 CL0649 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0933 - - - 0.0