Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone3ag0939 ATGTCGGTGATCTTTGCTCCTTCGGCTTTTTTCTGGCTAATTTTGGTGTTCGGTTTGGTTTCACGAGTCTCTGCTAACACTGAAGGTGATGCATTGTTTGAGTTTAAATCAAGGTTATCGGATCCTAATAATGTCCTGCAGAGTTGGGATTCCACACTTGTGAACCCATGCACATGGTTTCACGTCACGTGCAACAATGAGAATAGTGTCACTCGAGTTGATCTTGGAAATGCCAACTTATCCGGTACCTTGGTTCCCAAGCTCGGTCAGCTAGGAAATTTGCAATACCTGGAGCTCTATAGTAACAACTTAACTGGAATTATTCCGGATGCGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACCGTTTAACTGGCTCCATACCCACGACACTGGGAAAGCTTTCAAAACTGCGTTTCCTGCGTCTCAACAATAACAGCTTGTCAGGGACTATTCCTTACTCCTTAACTGACGTAGGATCACTGCAAGTCCTGGATCTTTCAAATAATCGGCTAACTGGAGATATTCCAGTCAATGGTTCTTTTTCGCTGTTTACTCCCATCAGTTTCACTAATAATCTTCTGAATAAACCTCCACCTGCTCCGCCTCCTCCTATTCAGCCATCACCGCCTTCGCTTTCAGGTAATAGTAACACTGGAGCTATTGCTGGAGGAGTTGCTGCTGCTGCCGCTTTGTTGTTTGCTGCCCCTGTAATTGTGCTTGCTCTTTGGCGGCGTAAAAGACCAGAAGAACATTTCTTTGACGTACCGGCTGAAGAGGATCCAGAAGTTCATCTTGGCCAGCTCAAAAGGTTTTCTTTACGTGAGCTACAGGTTGCCACAGATTATTTTAGCAACAAAAACATTTTGGGTAGAGGAGGATTTGGAAAGGTTTATAAAGGACGCTTGGCTGATGGCTCTCTAGTGGCGGTAAAAAGACTAAAGGAAGAGCGTACTCAAGGTGGGGAGCTACAATTCCAAACAGAGGTAGAAATGATCAGCATGGCTGTGCACCGTAATCTGCTTCGTCTCCGTGGTTTTTGCATGACACCAACAGAGCGGGTTCTTGTCTATCCTTATATGGCTAATGGAAGTGTAGCTTCATGTCTCAGAGAGCGACCGGATTCACAGTCCCCGCTTACTTGGCCAATACGGCAGAGGATTGCTCTTGGAGCAGCAAGGGGACTTGCTTATTTACACGATCACTGCGATCCTAAAATCATCCACAGGGATGTTAAGGCTGCAAACATACTATTGGATGAAGATTTTGAAGCTGTTGTTGGAGATTTTGGATTGGCTAAACTCATGGACTATAAAGATACTCATGTCACAACTGCAGTTCGTGGCACAATTGGCCATATAGCACCTGAATACCTCTCAACTGGAAAATCTTCTGAAAAAACAGATGTTTTCGGGTATGGGGTAATGCTTCTCGAAATTATAACCGGACAGAGGGCTTTTGATCTTGCTCGGCTTGCAAATGACGATGATGTCATGTTACTCGATTGGGTCAAAGGACTTCTGAAAGATAAGAAGTTAGAAACACTAGTCGATGCTGATCTTGAAGGTAATTATATAGATGAGGAAGTAGAGCAACTCATTCAAGTAGCTCTACTATGCACTCAAGGGTCCCCTTTAGAAAGACCCAGAATGTCGGATGTGGTAAGAATGCTTGAAGGAGATGGTCTAGCCGAAAGATGGGAAGAGTGGCAAAAAGAGGAGCGGTTCCACCACGACTTCAACCATAGCCACCTCCCCACCACCACTGGCTGGGTATTGGACTCCACCTCACAAATCACTAATGATATATTATCCGGTCCAAGGTGA 1839 44.75 MSVIFAPSAFFWLILVFGLVSRVSANTEGDALFEFKSRLSDPNNVLQSWDSTLVNPCTWFHVTCNNENSVTRVDLGNANLSGTLVPKLGQLGNLQYLELYSNNLTGIIPDALGNLTNLVSLDLYLNRLTGSIPTTLGKLSKLRFLRLNNNSLSGTIPYSLTDVGSLQVLDLSNNRLTGDIPVNGSFSLFTPISFTNNLLNKPPPAPPPPIQPSPPSLSGNSNTGAIAGGVAAAAALLFAAPVIVLALWRRKRPEEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDYFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERVLVYPYMANGSVASCLRERPDSQSPLTWPIRQRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLEIITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLEGNYIDEEVEQLIQVALLCTQGSPLERPRMSDVVRMLEGDGLAERWEEWQKEERFHHDFNHSHLPTTTGWVLDSTSQITNDILSGPR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4872033 4877725 - Conep03aG0097000.1 Cone3ag0939 434398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone3ag0939 612 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515(InterPro)
Cone3ag0939 612 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524(InterPro)
Cone3ag0939 612 SUPERFAMILY L domain-like 27 217 - -
Cone3ag0939 612 MobiDBLite consensus disorder prediction 200 221 - -
Cone3ag0939 612 Pfam Protein tyrosine and serine/threonine kinase 291 562 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0939 612 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
Cone3ag0939 612 Gene3D Transferase(Phosphotransferase) domain 1 365 582 - -
Cone3ag0939 612 ProSiteProfiles Protein kinase domain profile. 288 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0939 612 Gene3D Ribonuclease Inhibitor 24 204 IPR032675 -
Cone3ag0939 612 FunFam Somatic embryogenesis receptor kinase 1 24 209 - -
Cone3ag0939 612 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515(InterPro)
Cone3ag0939 612 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cone3ag0939 612 SMART serkin_6 288 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone3ag0939 612 SMART LRR_typ_2 91 114 IPR003591 -
Cone3ag0939 612 SMART LRR_typ_2 115 138 IPR003591 -
Cone3ag0939 612 SMART LRR_typ_2 163 188 IPR003591 -
Cone3ag0939 612 SMART LRR_typ_2 139 162 IPR003591 -
Cone3ag0939 612 SUPERFAMILY Protein kinase-like (PK-like) 267 563 IPR011009 -
Cone3ag0939 612 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515(InterPro)
Cone3ag0939 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone3ag0939 612 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Cone3ag0939 612 MobiDBLite consensus disorder prediction 200 215 - -
Cone3ag0939 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 611 - -
Cone3ag0939 612 FunFam Somatic embryogenesis receptor-like kinase 1 365 582 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0939 Cone-Chr3:4872033 Cone4ag1526 Cone-Chr4:11830753 8.01E-251 dispersed
Cone3ag0933 Cone-Chr3:4830994 Cone3ag0939 Cone-Chr3:4872033 1.98E-72 proximal
Cone11ag1225 Cone-Chr11:9182532 Cone3ag0939 Cone-Chr3:4872033 5.02E-07 transposed
Cone10ag0914 Cone-Chr10:4743650 Cone3ag0939 Cone-Chr3:4872033 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82692 PF10184 DUF2358 1.00E-23 CL0051 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone3ag0939 K13416 - rcu:8277786 984.941